Array 1 597908-599523 **** Predicted by CRISPRDetect 2.4 *** >NZ_WACL01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain AR-0410 contig1_AR-0410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 597908 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 597970 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 598031 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 598092 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 598153 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 598214 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 598275 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 598336 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 598397 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 598458 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 598519 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 598580 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 598641 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 598702 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 598763 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 598824 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 598885 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 598946 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 599008 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 599069 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 599130 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 599191 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 599252 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 599313 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 599374 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 599435 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 599496 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 615806-617703 **** Predicted by CRISPRDetect 2.4 *** >NZ_WACL01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain AR-0410 contig1_AR-0410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 615806 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 615867 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 615928 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 615989 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 616051 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 616112 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 616173 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 616234 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 616295 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 616356 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 616417 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 616478 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 616539 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 616600 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 616661 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 616722 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 616783 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 616844 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 616905 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 616966 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 617024 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 617085 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 617146 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 617207 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 617268 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 617329 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 617390 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 617451 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 617552 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 617613 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 617674 29 93.1 0 A...........T................ | A [617700] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //