Array 1 68724-69737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWV010000010.1 Listeria booriae strain FSL L7-0039 NODE_10_length_127008_cov_29.195900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68724 30 100.0 38 .............................. AGTTTTGCAATATTGGTTTGACTGCCTTGTTATGCAGG 68792 30 100.0 36 .............................. GTCGAACGCTTAAAATAAGGAGGCGGCGAGTATGGC 68858 30 100.0 36 .............................. TTGATTTCGCCCCGACTTTCCTATAGAATGGTTATG 68924 30 100.0 35 .............................. AGATTTTATTAAGTGCAAACACAGCCTCTACTCAA 68989 30 100.0 35 .............................. AGATTTTATTAAGTGCAAACACAGCCTCTACTCAA 69054 30 100.0 34 .............................. CTATTTGAACAAGCGCAGTTGGGGTACACTTCTG 69118 30 100.0 36 .............................. GCATCAAATTTGTTTCCCTTCTCATCAACGCCTTGT 69184 30 100.0 34 .............................. GTGATATTTTTGAGGATGAGCAACAGGACATTAC 69248 30 100.0 38 .............................. ATACACCTTCGAGTTGGTCCTTATCAAAAAAGTTCTCA 69316 30 100.0 36 .............................. AAGGTTCGGAAGCATCATGTTGGACATCAAACGGCA 69382 30 100.0 36 .............................. TCAAATAAGAACGGTCGATTTCGTCGTAGCAAATGA 69448 30 100.0 37 .............................. TTCTGTGCATTTCGGCGATGATGTCTGACTTGTATTG 69515 30 100.0 36 .............................. ACATTCGCTTTAGACACAGCACCCGATTCGTTAGCC 69581 30 100.0 34 .............................. TCTTCTGACCTTCCACTAGCCCCGTATGCACGGC 69645 30 100.0 34 .............................. CCGTGACAGTTCCCGTTAAAAGCGCTGTGGATTC 69709 29 86.7 0 .............C...A.....-.....C | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCACAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGGCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCTTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGCTAGTTAATAAATATACATCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGTCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGAGTTTTGTTAAGCGTTGATGTGATTGGATTTGAGGCTGTTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : CCCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAATATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGCCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATCTTTGTGAAAACGTTTGCGATAACATATTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 175867-173668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWV010000001.1 Listeria booriae strain FSL L7-0039 NODE_1_length_260656_cov_28.845818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 175866 30 100.0 36 .............................. AACAGATTTGCTACATCCGCATCTAGATATCTGGCA 175800 30 100.0 36 .............................. ATCGCAGCGGCTGTTCCAGCAAGCCCGACAATTATT 175734 30 100.0 36 .............................. CGGTACGAAAATTTAATAAAAGAGCTTTCTGACTTC 175668 30 100.0 36 .............................. AGTCCTGCGGGGGTTAATAACACCCTGCGGACAGGT 175602 30 100.0 34 .............................. ACAACAATACTAGCAACGGGGAGCCATTTTTTCG 175538 30 100.0 35 .............................. GTACTATAATTTATATCAACCCCTGGCTCTATATT 175473 30 100.0 36 .............................. CTGTATGGCAACTGCTTCAATTGGTTTTTTGACAAC 175407 30 100.0 36 .............................. TAAAGTGAGTACGACGGGATGGGACGACAAGGAAAA 175341 30 100.0 36 .............................. CGCTACTCGGCAGGCTTTTTAAAGTATTCGCAACGA 175275 30 100.0 34 .............................. ACTCTCTAGTACACTTTAAGAGTGTTTCATTTAC 175211 30 96.7 34 ........................A..... CTGGCTTTGCGGATTTACTACGTTTAACCTTCGC 175147 30 100.0 35 .............................. AGCACCAACATGACGGCATAGCCGAATGGCGGTAT 175082 30 100.0 34 .............................. CCAGCTTCCTTAATCTTAATTAGCGTCTCTTTCG 175018 30 100.0 36 .............................. ATTGACGTGTATACGAAAGTACTCGCTGGTATAGGC 174952 30 100.0 36 .............................. AAGTCTCGCTGGATGTGGCCGCCAAACATCAGAGTA 174886 30 100.0 36 .............................. CAGATTGCCCTTCACGCTGTCCGCGTCTAGGGTGAC 174820 30 100.0 37 .............................. TTAATCCTCATTATTACGATATTTTTTTGGAGTATAT 174753 30 100.0 37 .............................. GAAATAAGCTTTCCGTAACTATCATACAGCCCATCAA 174686 30 100.0 36 .............................. AATTTTGTGGTTTAAGTGTAATTTTGACAGGTTGGT 174620 30 100.0 36 .............................. CACTTAGCAAAAACAGTGTGGGTATATCTTCGCTTC 174554 30 100.0 35 .............................. CACTCTCTAAGAAAACAACTTTAATATCTTCACGG 174489 30 100.0 33 .............................. TCATTTCCTGAATCATTTTTCTTTTACTACTTC 174426 30 100.0 37 .............................. AAACGCGTGATATCAATGACAAGCACGGCATCATATT 174359 30 100.0 36 .............................. TTGAAAATGAATACCGCTTTGTTGGGTAGCGTGATC 174293 30 100.0 36 .............................. ACGTTTAGTGTTATAGCTTGTCCATTAGCGTAAGGT 174227 30 100.0 36 .............................. CAATGACAGCAAAAATGCGGCTGAAAGTATGAGTGA 174161 30 100.0 36 .............................. TAGTGATATAATAGCATCTACTGCATGATAGAAAGC 174095 30 100.0 35 .............................. TTGCACCTAATTCTTTGATAGCATCCTGTTTGGAT 174030 30 100.0 36 .............................. ACCAGTTCGATCTGATGTTTTAGCTCCAATGGATTG 173964 30 100.0 36 .............................. TATGATGCTATGAAAGTTAAACACAAATGTCTCCTT 173898 30 100.0 36 .............................. CTGTGTGGCGCTTACAGGCTATGACAGTGGCAACTA 173832 30 100.0 36 .............................. GATGGACGAATGACGAATTCCACATATGAGGGAATA 173766 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC ATAA [173745] 173697 30 83.3 0 ........TC...C...A......A..... | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTAGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGGAAAAGGGCGCACTTATACACCCTGCTTTCCCAAAGTACTATGAAACATAAATCGATCTAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTCCGTAGCCAGTACAAGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 45765-44747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWV010000013.1 Listeria booriae strain FSL L7-0039 NODE_13_length_123029_cov_28.289149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45764 30 100.0 36 .............................. CCAGGAGCACTTGCAGAATATGCAGACCGCGCTGGC 45698 30 100.0 36 .............................. CCTGTTGTAATTTATCAATAGTTGGCTTTTGATTTT 45632 30 100.0 38 .............................. TCGTTCGATGTGAACAATGTCGAATCACACAATTCTAC 45564 30 100.0 36 .............................. CTGATGGATTAGTAAGCATACACTTTCAAATTGATA 45498 30 100.0 35 .............................. CGCTAAGACGGCGTACTTGTCGAACGCATTTCTAT 45433 30 100.0 36 .............................. ATGGGCATTGACTTTATTCCAGTTGTGCTATTCCCT 45367 30 100.0 36 .............................. AATCATAATCACGATGACGCCCCTGATGCATTAGCT 45301 30 100.0 36 .............................. TCAATAACATCTTCCTCAACCCCTGTGCGATCTACC 45235 30 100.0 36 .............................. AAATCCAAATCTACTCATCTCCTTCCAAATAAAAAA 45169 30 100.0 36 .............................. GCATGACATTGTATAATAAGCGCTATGAAGTCATCT 45103 30 100.0 36 .............................. TTCTTAGTTTCGTATTTTTGTATCGAAGCCATGTTC 45037 30 100.0 35 .............................. TGTCTTGCTTACCGTCTAAGAAGATACCCTTTCCG 44972 30 100.0 34 .............................. GTGGAAGAACTAGAAAAAGGATATATGGAACGCA 44908 30 100.0 36 .............................. GAAAAAAGTGGTGATACAGTTAGCATATGGGTTGAC 44842 30 100.0 36 .............................. GATTACGATGCATCAAATCATTTTATTGCCAGTATT 44776 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGTATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGCGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTACAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATCTTTGTTATGCATTGGTACTAAAAGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : GTCAGCGAGGCATACTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAGTACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTGACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGCCCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 49589-49013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWV010000013.1 Listeria booriae strain FSL L7-0039 NODE_13_length_123029_cov_28.289149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 49588 30 100.0 36 .............................. CCCCTCCATTTATTTCTTCGGATTTGGCGGTTCGGG 49522 30 100.0 36 .............................. TATACTGTCTTTGACGAAATGCGTATCGAAGAAGCT 49456 30 100.0 36 .............................. AAAGTACAATTGTTGCAATCATACACATTGTATTAA 49390 30 100.0 36 .............................. TTGAAATCCTGACAAATCTAACTGCAATCGTGCCTC 49324 30 100.0 34 .............................. GTGTACTGCATTAATTCAATGTCTACGCCTACAC 49260 30 100.0 36 .............................. AGGTTTCGAAGTCTTTTTACTATCAAACACTGCGGT 49194 30 100.0 34 .............................. TTGCTAACAATTGAAGTCTCCCCTACAACGATAT 49130 30 90.0 58 CG.............T.............. TGTCGGGAACGACAGAGAATAACGGGCAAGTTTTGATTTCACCCGAAAATGGATCGGT 49042 30 80.0 0 .............C...A.....CA...TC | ========== ====== ====== ====== ============================== ========================================================== ================== 9 30 96.7 38 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : CGACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCTGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCATAAAAACTAGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTTAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACAAGTCACCATAGACAGACCTATCGGATTTAAAGACGATTACGGAAATATATACCCAATAAACTACGGATTCGTTCCGGGAGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACTGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAACAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAACC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1839-2534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWV010000014.1 Listeria booriae strain FSL L7-0039 NODE_14_length_100730_cov_29.202946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1839 36 100.0 30 .................................... AAATCAGAAGAAGATTGAAGAAATTATGTT 1905 36 100.0 30 .................................... TGTCGCAAGAAATGGCGAACATGATATGCA 1971 36 100.0 30 .................................... ATGACGCAAACGGTGATTTGCGTTCAATGG 2037 36 100.0 30 .................................... TTGAAAAATGGTTAAACCCAGAAGTAAAGG 2103 36 100.0 30 .................................... GGCGATGTAGCAGATATTGGGCAGATGACA 2169 36 100.0 30 .................................... ATAGCACCGCCCAATTGAAAGGCTGGCTGT 2235 36 100.0 30 .................................... CGACTACAAGATCATGACGATCGCCCAGGC 2301 36 100.0 30 .................................... GTAGGTACAAAGTAAAAAGAGAAGAATCTA 2367 36 100.0 30 .................................... AAAAAATAAGGGATATATCAGTGCATGATT 2433 36 100.0 30 .................................... AAAGACAACAAGAAGGCATTTATACAGTAT 2499 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ATTGTACAGCTATCCCCATATCGAATATCTTCGAAAAATCATCAACACTCGGCAGTTTCTTTGTACTAATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGTATAACCTCATCATTTTTGAGAAATGGTTCTAGTGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAACAGGATACATCATTGTTTTGCAAGTAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAAAAATAATTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGGTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGTATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 5997-6297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWV010000014.1 Listeria booriae strain FSL L7-0039 NODE_14_length_100730_cov_29.202946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5997 36 100.0 30 .................................... GTGTCGAACATGATAAAGATGTTGCGGAGC 6063 36 100.0 30 .................................... ACTGATGGTGGTGTTGAACTGAACATCGAA 6129 36 100.0 30 .................................... CGTCTACTAGCATTTGTGTTTCTTTAACAA 6195 36 100.0 30 .................................... GCTTGAAAATGGTGAACAAACGCATTCCAG 6261 36 83.3 0 ..........C...............TG.A..C..A | A [6290] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTACCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCATAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTGCTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAATACAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //