Array 1 190338-189820 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWZ01000001.1 Salmonella enterica subsp. enterica serovar Stanley strain G115 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190337 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 190276 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 190215 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 190154 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 190093 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 190032 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 189971 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 189910 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 189849 29 93.1 0 A...........T................ | A [189822] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207974-206461 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWZ01000001.1 Salmonella enterica subsp. enterica serovar Stanley strain G115 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 207973 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 207912 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 207851 29 100.0 53 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTANNNNNNNNNNNNNNNNNNNNN 207769 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 207708 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 207647 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 207586 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 207525 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 207464 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 207403 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 207342 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 207281 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 207220 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 207159 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 207098 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 207037 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 206976 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 206915 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 206854 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 206793 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 206732 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 206671 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 206610 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 206549 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 206488 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ===================================================== ================== 25 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAANNNNNNTTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //