Array 1 987645-989624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065566.1 Salmonella enterica subsp. enterica serovar Albany strain R13.1544 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 987645 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 987706 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 987767 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 987828 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 987889 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 987950 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 988011 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 988072 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 988133 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 988194 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 988255 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 988316 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 988377 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 988438 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 988499 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 988560 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 988621 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 988682 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 988743 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 988804 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 988865 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 988926 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 988987 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 989048 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 989109 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 989170 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 989231 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 989292 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 989353 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 989414 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 989475 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 989536 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 989597 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1006182-1009080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065566.1 Salmonella enterica subsp. enterica serovar Albany strain R13.1544 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1006182 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 1006243 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 1006304 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 1006365 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 1006426 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 1006487 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 1006548 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 1006609 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 1006670 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 1006731 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 1006792 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 1006853 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 1006914 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 1006975 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 1007036 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 1007097 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 1007158 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 1007219 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 1007280 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 1007341 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 1007402 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 1007463 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 1007524 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 1007585 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 1007646 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 1007707 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 1007768 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 1007829 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 1007890 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 1007951 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 1008012 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 1008073 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 1008134 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 1008196 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 1008257 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 1008318 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 1008379 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 1008440 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 1008501 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 1008562 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 1008623 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 1008685 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1008746 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 1008807 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 1008868 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1008929 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1008990 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1009051 29 100.0 0 ............................. | A [1009078] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //