Array 1 1152879-1150523 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJRA01000003.1 Listeria monocytogenes strain NRRL B-57109 PROKKA_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1152878 29 100.0 36 ............................. AAAACTTCGGCTTCGTCTTTTGTAAGCCCCATTGCT 1152813 29 100.0 36 ............................. CACAGTTGGTATGATGCTAATCTGTCTAAAGATTGC 1152748 29 100.0 35 ............................. GGAACTAAATTCATTTGATCTTTGATTGCTTCTTT 1152684 29 100.0 37 ............................. CTTGTTGATAATGTAAAAATGATACAAGTGTCATGTC 1152618 29 100.0 35 ............................. AGGACTACCGATTATCGGTCGGTTGCTTTGCCTAC 1152554 29 100.0 36 ............................. AAATTTTCCTCGTCGAATATATCCATCGCCCATATA 1152489 29 100.0 37 ............................. CCTGAAACATAACAATACTGATCTAGAATTTTAGAGT 1152423 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 1152360 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 1152297 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 1152232 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTATCACTGCCGAA 1152168 29 100.0 37 ............................. ATGAATGGAGAGAAAAAGTAAAAGTTATTTTGAGGAA 1152102 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 1152038 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 1151975 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 1151910 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 1151845 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 1151781 29 100.0 37 ............................. GAACACGCGCCAGAAAAATGGGCCAAATTCATCGAGT 1151715 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 1151652 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 1151586 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 1151522 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 1151457 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 1151394 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 1151328 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 1151263 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 1151198 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1151134 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 1151069 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 1151003 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1150939 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1150873 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 1150808 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 1150744 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 1150681 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 1150618 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 1150552 29 93.1 0 .......................C....C | A [1150527] ========== ====== ====== ====== ============================= ===================================== ================== 37 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGTTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACATAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAACAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1170459-1169779 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJRA01000003.1 Listeria monocytogenes strain NRRL B-57109 PROKKA_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1170458 29 100.0 36 ............................. AATACTTTTCGACTAACTCAACATTTTCGTCAAATA 1170393 29 100.0 36 ............................. AAGATTGGATCTTTATCTGTTGAAAATATCGATCGC 1170328 29 96.6 36 ..............A.............. TTGCATATTTAAAGACTTGTGCTGTTTTGATTTTAA 1170263 29 96.6 36 ..............A.............. AATCATAATTAGCGACCTCCTAAAAGCTTGTTAATG 1170198 29 96.6 36 ..............A.............. ATACTTCAAATTCGTTTCTTAATATCGAAATTTGTT 1170133 29 96.6 38 ..............A.............. GCGCTTGTAGTTGAAACCGATAGAAGACAAGCACTTAA 1170066 29 100.0 35 ............................. TGTTGAGTGCTTCAACCAAGTACAACGCACGATAA 1170002 29 100.0 36 ............................. TGAAACTATCCGTTTCTTTGGTCTTCACTTGCCCCG 1169937 29 100.0 36 ............................. TGTCGATCTTGCGCAGTTAAGGTAAATGCTGGTTCT 1169872 29 86.2 36 A......A......A..........G... TCGTAATCTCCTTGTTCTCTTGTATTGTCTATACCG 1169807 29 79.3 0 T.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 95.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGGCGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //