Array 1 2010446-2008099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048001.1 Bifidobacterium longum strain CACC 517 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2010445 36 100.0 28 .................................... ACGGCGGAGCGGGTTTCGTAGCAACCAG 2010381 36 100.0 28 .................................... ATGTTTACAATACCCTGTGTTATCCATG 2010317 36 100.0 28 .................................... CGACCGGTGCCGGATTCAACGTTTCTGG 2010253 36 100.0 28 .................................... CTATGCATCGGTGATAGCTACGCCAATT 2010189 36 100.0 29 .................................... TTGGGGAGGTGCCCGGTACTGTAATCTCT 2010124 36 100.0 28 .................................... GCTTGGCTCGGGGTTTTGCGTAATCACG 2010060 36 100.0 28 .................................... CAAGTGGAACTTGTGTACTCACTGCATA 2009996 36 100.0 28 .................................... ATTGTAGCCGGGTCACGTATGCATTTAG 2009932 36 100.0 28 .................................... TATTCGTTGCCGATGATGTTGCGGAGCT 2009868 36 100.0 28 .................................... CGTGCCTATGCGTTGTTTGCCGCCTTCC 2009804 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 2009740 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 2009676 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 2009611 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 2009546 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 2009482 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 2009418 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 2009354 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 2009290 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 2009226 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 2009162 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 2009098 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 2009034 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 2008969 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 2008905 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 2008841 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 2008777 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 2008713 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 2008649 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 2008584 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 2008519 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 2008455 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 2008390 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 2008326 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 2008262 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 2008198 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 2008134 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 37 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2221932-2222276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048001.1 Bifidobacterium longum strain CACC 517 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 2221932 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 2221998 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [2222004] 2222082 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 2222142 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [2222190] 2222190 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 2222247 27 81.5 0 C.............C.....C....CG | GC,C [2222264,2222268] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //