Array 1 429148-430455 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUI01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 6 NODE_3_length_692391_cov_28.3557, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429148 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 429209 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 429270 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 429331 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 429392 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 429453 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 429514 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 429575 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 429636 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 429697 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 429758 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 429819 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429880 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429941 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 430002 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 430063 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 430124 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 430185 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 430246 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 430307 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 430368 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 430428 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447125-448740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUI01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 6 NODE_3_length_692391_cov_28.3557, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447125 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 447186 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 447247 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 447308 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 447369 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 447430 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 447491 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 447552 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447613 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447674 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447735 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 447796 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 447857 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 447918 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 447979 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 448040 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 448101 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 448162 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 448223 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 448284 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 448345 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 448406 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 448467 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 448528 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 448589 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 448650 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 448711 29 100.0 0 ............................. | A [448738] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //