Array 1 2896912-2896583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066796.1 Erwinia amylovora strain ATCC 15580 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2896911 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 2896851 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 2896791 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 2896731 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 2896671 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 2896610 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2908481-2906375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066796.1 Erwinia amylovora strain ATCC 15580 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2908480 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 2908419 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 2908358 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 2908297 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 2908236 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 2908175 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 2908114 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 2908052 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 2907991 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 2907930 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 2907869 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 2907808 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 2907747 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2907686 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2907625 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 2907564 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 2907503 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2907442 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2907381 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2907319 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2907258 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2907197 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2907136 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2907075 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2907014 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2906952 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2906891 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2906830 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2906769 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2906708 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2906647 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2906586 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2906525 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2906464 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 2906403 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2921610-2919387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066796.1 Erwinia amylovora strain ATCC 15580 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2921609 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 2921548 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 2921487 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 2921426 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 2921365 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 2921304 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 2921243 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2921182 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2921121 29 100.0 31 ............................. ACAAAAGACAACACCCCCCTTACCCCCCACG 2921061 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 2921000 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 2920939 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 2920878 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 2920817 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 2920756 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2920695 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2920634 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 2920573 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 2920512 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 2920451 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 2920390 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 2920329 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 2920268 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 2920207 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 2920146 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 2920085 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 2920024 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 2919963 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 2919902 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2919841 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2919780 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2919719 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2919658 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2919597 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2919536 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2919475 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2919414 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //