Array 1 852534-853461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015563.1 Pasteurella multocida strain USDA-ARS-USMARC-60380 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 852534 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 852594 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 852654 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 852714 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 852774 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 852834 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 852894 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 852954 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 853014 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 853074 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 853134 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 853194 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 853254 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 853314 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 853374 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 853434 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2078887-2075978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015563.1 Pasteurella multocida strain USDA-ARS-USMARC-60380 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2078886 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 2078826 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 2078766 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 2078706 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 2078646 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2078586 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 2078526 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2078466 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2078406 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2078346 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2078286 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2078226 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2078166 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2078106 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2078046 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2077986 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2077926 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2077866 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 2077806 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 2077745 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2077685 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2077625 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2077565 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2077505 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2077445 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2077385 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2077325 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 2077265 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2077205 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2077144 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2077084 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2077024 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2076964 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 2076904 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2076844 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2076784 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2076724 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2076664 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2076604 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2076544 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2076484 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2076424 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2076364 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2076304 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2076244 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2076184 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2076124 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2076064 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2076004 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //