Array 1 34525-40073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILM010000017.1 Dorea longicatena strain MSK.16.48 NODE_17_length_76795_cov_314.897, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 34525 30 100.0 35 .............................. TTGAACTTTTTGACAAGGTTTGTTCCAGTGTCGAC 34590 30 100.0 35 .............................. CTATTTGTATGGCGATGATTTATAATGGTCAATTC 34655 30 100.0 35 .............................. TGATAATATGGATAAAGTTCTCCAGAAAAGTCTAT 34720 30 100.0 35 .............................. CAGATTTCAATTGCTTTTGAATAGATACTATCCAC 34785 30 100.0 36 .............................. ACGTATGAGATCGCCCCTCCCGGTGATAATGCTTGA 34851 30 100.0 34 .............................. GAAGCCATTGCTATAACCATAGAAACAGGCAGTA 34915 30 100.0 35 .............................. GTTAAAAACATTGAAAGAGCTTCTTGACTGTGGAG 34980 30 100.0 34 .............................. CCTTTCGTATTAAGATATCTCTGTGCTGCTTTTG 35044 30 100.0 34 .............................. GAAAACGAAGTAACATCCATCTGCACACCGCACG 35108 30 100.0 35 .............................. ATCATAGAAACTCACCCCTTTTCTATGAGAGCTTT 35173 30 100.0 36 .............................. GCTACAATGATGACTGTCCGCACAGGGATAAGCCAG 35239 30 100.0 34 .............................. ACAATGAACCGCCGACAGTGAGCAATAGAAAAGT 35303 30 100.0 35 .............................. CTTATTCTCCTGTATGACAAATGTTTGTAATCTTT 35368 30 100.0 36 .............................. CACAGAACTGGAATCGCTTAGTGTCGATGGTAATTG 35434 30 100.0 35 .............................. TTGAGGTGTTGATATCTCTGTTGGAAGAACAGGAA 35499 30 100.0 36 .............................. GTAGTTGTACCAAGCTTTTTTCGCTTGTACAACACG 35565 30 100.0 37 .............................. TTACTTGTCGAGAACTGTTTTACTTTTTTCATTGGCC 35632 30 100.0 35 .............................. CTTACACCGTCTGCTACGCTTTCATAAGCAGAATC 35697 30 100.0 35 .............................. TTGAATTTGGAACTTCGATTGTCTCAAACATTTCC 35762 30 100.0 35 .............................. GATGATGGAGGACTTCTGATTAAGACTATCTCGGC 35827 30 100.0 36 .............................. AAATCTGCAAGTAGTCCCCTACGCATCTGTATAGCC 35893 30 100.0 36 .............................. TCTGTAAAAAGAGTATTTACAATCTCATACCCTTTT 35959 30 100.0 36 .............................. ACCAAATTAACAGCTACACAGCAAAACGAGTTCACC 36025 30 100.0 34 .............................. GAAGACAGGTAAGAAGATGGGGTGTTCGCTGGGA 36089 30 100.0 35 .............................. CTCTTGTTTCTGCAAATAATACATTCTGATTTGTT 36154 30 100.0 36 .............................. GCTACAGAGGATTTGCGGAATGAGACGCCGATGGAT 36220 30 100.0 34 .............................. GAGAACAGATGAAATAGAACAACTTTTAGAAACG 36284 30 100.0 35 .............................. CAGATCTTAGGTTCGATGATCTTACCGGCTACGGT 36349 30 100.0 34 .............................. GTAACCACCGGCGATAAAATCCGTCCGTCTTATC 36413 30 100.0 37 .............................. AGAATAATATCTGAGTCATTAAAATCTACAGTTAAAT 36480 30 100.0 36 .............................. GTCGCCTTAGCCGGATCATAATAGTACGGAAACTCT 36546 30 100.0 36 .............................. GAGTCCAGGTATATTTTTTACCGGCGATCTCGACCT 36612 30 100.0 31 .............................. GAAGAAGCAATCGAAAAGATGTTGAACAACC 36673 30 100.0 36 .............................. CGGCGTGAATAGAAACGATGTTAGATTGTGCGCCAT 36739 30 100.0 34 .............................. GAAGCACAAAAGGCGAACCTTGCGGCAACACTAG 36803 30 100.0 36 .............................. GATTCTTAGGAAAACATGCGGCAGGTGTGGCAGTAG 36869 30 100.0 34 .............................. GAAGAAGAAGCAATCGAAAAGATGTTGAACAACC 36933 30 100.0 35 .............................. TAAGTTGTGACTTGTTCATCTGTGAGATAGGAATT 36998 30 100.0 36 .............................. TAAATTGAAACATAGTGCAAGTCTTAGAATACAGGT 37064 30 100.0 34 .............................. TTTATAATTATGGGACTTGTAGTTCTAGCATTTC 37128 30 100.0 35 .............................. ATAATAAGTTTTCCCACGGTGATATTGGTGCTGCT 37193 30 100.0 35 .............................. ACTTAGAGGATATGGATTATTAGGAGGGTGTAAAA 37258 30 100.0 36 .............................. GATACAAATCTGGTAGAGAGGTTTTTGCAGAACAAG 37324 30 100.0 34 .............................. CTTGGTACTGTAGAAAGGTATGGTGATCCTGATT 37388 30 100.0 34 .............................. TCAGACACCGGGTGGTCATTCCCAGTGTGACGGC 37452 30 100.0 34 .............................. TTACGAAGCGCGGAGCAAAAGAAGCCGGGATAAT 37516 30 100.0 34 .............................. ACATATACATGCACATTCTCAATAATGGTTCTAT 37580 30 100.0 34 .............................. CATACATCTATTTCTTCCGTTTCGTCTTTCGGCA 37644 30 100.0 34 .............................. GATCCGACAGCTTATTTAAGAACCGTCCGAACTC 37708 30 100.0 36 .............................. CCTGGACATACAAAGTAGCGAACAGACCGGCAACAA 37774 30 100.0 34 .............................. CAAGAATGGAATTAAAACGGATGATGTGTTAAGC 37838 30 100.0 34 .............................. ATGATCTGGACACGGTAATGAATCCACCAAAAGA 37902 30 100.0 34 .............................. AAGCAAGCAGCGTTATAACCTCCATGCGCTACAT 37966 30 100.0 36 .............................. GTGTTACACCGGAGGAATCAAACACAGAGATCTGTT 38032 30 100.0 34 .............................. AAATTCATGTTCGCCATTGTCTTTTCTCCTTCTG 38096 30 100.0 36 .............................. CGGCTATAACTAAGGCCAACATTAAAACCAGGAGAG 38162 30 100.0 36 .............................. AACAATACTGGATCGTATAAACGGAAAGGTAAAAGG 38228 30 100.0 34 .............................. ATTGTGATTGATATTCCTGTTTGATAGTGTGTAA 38292 30 100.0 35 .............................. ATGGAACACAGCAGGCAATTAACAATGTAGCAGTT 38357 30 100.0 34 .............................. TCTGTTTCGGTTGTGGATTGACAGGTGATGTGTT 38421 30 100.0 35 .............................. ATTAAGAACAAGTTAGATGGTGATGTGGCGGCGAA 38486 30 100.0 35 .............................. GGATTACAATATTGTTCTTGGCTGCATAGTCCCGG 38551 30 100.0 34 .............................. AAATGTTTGCTACTGATCCGCGGCATATCCGTCC 38615 30 100.0 36 .............................. ACCGTCAAGAGTCCTCAGATAACCGGAATGCCAGGG 38681 30 100.0 34 .............................. ATGATTCAGGTGTGCTTGGTGAAAAGATTGATAG 38745 30 100.0 34 .............................. TTTCTCTACCGGACGGATACGATACTTTAACACC 38809 30 100.0 35 .............................. ATGATTGATGCTTATAACAAAGCTATCAGCGAGAA 38874 30 100.0 34 .............................. CGTAAGAAAACAATTATAAAAAGACTTGCTAATG 38938 30 100.0 36 .............................. GATGGTGGGACGAGGAACCAGATTATCACCAGAGAC 39004 30 100.0 34 .............................. GTCGGTACCATGATCGTAGGAGTCCGAGGAGTTA 39068 30 100.0 36 .............................. TAAAAGCAAATAAGACGCTACGCCGCTACTGCAAGA 39134 30 100.0 35 .............................. CGGCCTGATCGTTAAAAAGTCCGAGGCTGAGACCT 39199 30 100.0 36 .............................. AAGTGTGCGCTTATGAAAGAATCAAAGCCACTAACA 39265 30 100.0 35 .............................. ACAATACTCCTTTCTCCTCCGACTGCTGCCATCCG 39330 30 100.0 35 .............................. CAGAAACGAGAATGCGTGATGCATTACTAAGATCT 39395 30 100.0 35 .............................. CTTTACAACCTCACCATTTCTAATAACTCTTGTTC 39460 30 100.0 35 .............................. ATAAAAAAATCCTCAGCGGTCGCCAAACCGCGAAG 39525 30 100.0 35 .............................. TTATACTCCCGCCTCACTCTTTCCTGAATCCCACT 39590 30 100.0 35 .............................. GAATCACAGCCTTTTGTAGCGAGATTAAAAAGACC 39655 30 100.0 35 .............................. GCATTTTAGCATTGTTCATTTTTGTATCAACTCCG 39720 30 100.0 36 .............................. CAATAAATGTGAATAACCTAGAATCATAGTACCATT 39786 30 96.7 35 .......................G...... TGCTCGATATTGTAGAGGCTGACGCGGTGGAGGCC 39851 30 100.0 36 .............................. ACCGGATGATCATCACCTTTGGCCAGTCCGATCATC 39917 30 100.0 35 .............................. AGGACATATGGTCCAAAAAGGATTTCGTTTACGTC 39982 30 100.0 33 .............................. ATATTCGGTGGTTGGTATTTTTATACGCATTTT 40045 29 90.0 0 ......................-.GT.... | ========== ====== ====== ====== ============================== ===================================== ================== 86 30 99.8 35 GATAAACAGTAACATGAGATGTATTGAAAT # Left flank : TCCGTTTTCATTGAAAGAAGGGATGTAATGAAAAGTAAGAAGCAGTTGAATTATAATTACGCATTCTTGTTTTATGATGTTGGTGAAAAAAGAGTACAAAAAGTGTTCAAGGTATGCAAGAAATATTTGACACATTTTCAAAAATCAGTTTTTCGAGGTGAAATGACTCCTTCGAAGTTTATTGAATTGCGTAGAGAATTGAATAAAGTTATTAATAAGGACGAGGATTTTGTATGTATCATAAAGTTAATGAATGATAATGTATTTGGTGAAGAAATATTAGGAAATGGAGAAAAAGATACAGGAGAGACGTTGATAATATAAATATTTTACCAGGTGTTATTTAAAGAAAATAAAAAAATTAGTTGTAAAATAAGGGAATGTGTGTGATTATTATTTATAAAATAAAAATAGAGTATCGCCTGGTAAAAAGCTAGGAAAAGCTTGAAGATAGGGGATTTTAGATCCTCAGAAAAATGTAAAATGGCGTTAACTCGTTA # Right flank : TGATAAAATAAATATGTACATTTAGTGGAAAATAAAAATGTACAATCAAGGTTAGCATGCTATTGTATTCATGGAGGTGTTATCCATGAACGAAGCATTAAAGACTCAGCTCAAAATTCTCAAATTGAGTGATATAAAACCAAACTTTTCAGAACTTGCACGGTTTTATGATTTGGATCGCAGAACTGTCAAAAAGTATTATGACGGATATGAAGGCAAAGCTGCTCACAGAGATAAATCAAGCAAACTGGATAAACATTATGATCTCATCAAACAGAAACTTTCTATCAGAGGTGCGAATGTTCGCGCTGTGTATGAGTTCATTCTTTCTGAGAGGGATCCAAATATCGGTATCTTTGCTGATAGATAATAATATAAGATGTATTAAAATCGACGGAATAGATATAGAACGGGCGATTTGAGAACAGATAAACAGAAATCAAGGATATTTTGAAAATAGTTGTTAAGTAATATCGGAAACTAAAAAATAAAATATAAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //