Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYDB01000001.1 Listeria monocytogenes strain N16-2061 NODE_1_length_744478_cov_78.3467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 510243-513385 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYDB01000002.1 Listeria monocytogenes strain N16-2061 NODE_2_length_518741_cov_79.9793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510243 36 100.0 30 .................................... TAGTTACAATCTTTGTCCCGAAGAATTTCA 510309 36 100.0 30 .................................... TAAATTCTTTAATGATATTAATAAAGAAGT 510375 36 100.0 30 .................................... AGCATTTTTTATTGAAGTGAAAAACGAGAT 510441 36 100.0 30 .................................... ACTAAAAAAATTCATTTTTACAATTTTTAT 510507 36 100.0 30 .................................... CTTGTTGGTAATTTATCACCTGTAGCAAGT 510573 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510639 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510705 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510771 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510837 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510903 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510969 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 511035 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 511101 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 511167 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 511233 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511299 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511365 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511432 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511498 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511564 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511630 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511696 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511762 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511828 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511894 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511960 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 512026 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 512092 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 512158 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 512224 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512290 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512356 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512422 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512488 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512554 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512620 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512686 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512752 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512818 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512884 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512950 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 513016 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 513082 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 513149 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 513215 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 513281 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 513347 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [513372,513378,513381] ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //