Array 1 67200-65279 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOT01000076.1 Salmonella enterica strain NGUA-21_S9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67199 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 67138 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 67077 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 67016 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 66955 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 66894 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 66833 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 66772 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 66711 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 66650 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 66589 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 66528 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 66467 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 66406 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 66345 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 66284 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 66223 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 66162 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 66101 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 66040 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 65979 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 65918 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 65857 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 65796 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 65735 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 65674 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 65613 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 65552 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 65491 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 65430 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 65369 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 65308 29 100.0 0 ............................. | A [65281] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86935-84832 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOT01000076.1 Salmonella enterica strain NGUA-21_S9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86934 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 86873 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 86812 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 86751 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 86689 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 86628 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 86567 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 86506 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 86445 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 86384 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 86323 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 86262 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 86201 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 86140 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 86079 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 86018 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 85957 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 85896 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 85835 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 85774 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 85713 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 85652 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 85591 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 85530 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 85469 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 85408 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 85347 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 85286 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 85225 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 85164 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 85103 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 85042 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 84981 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 84920 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 84859 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //