Array 1 110517-113425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDB01000001.1 Pasteurella multocida subsp. multocida strain ATCC 15742 ZB100000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110517 28 100.0 32 ............................ TTGATACTGCCTAAATCATTTTTCCACGATTT 110577 28 100.0 32 ............................ TTATGAATTATGGCTACAAACACAAACCACAA 110637 28 100.0 32 ............................ TTTAACGATTCCATATTTTTTATTAATTTTAA 110697 28 100.0 32 ............................ ATATTAATGAAATCACTAGTCGTAGTATCATT 110757 28 100.0 32 ............................ TGTACTCCAAGTCCATTTATTATCTTTAATGT 110817 28 100.0 32 ............................ AGTTTCGCGATTAGTAAAAGTACTAACTTTTT 110877 28 100.0 32 ............................ TTGTACCTGCTTATCGAGGCGTGACTTCATTA 110937 28 100.0 32 ............................ ACTTGTGCTCACAATGACCGTAAATTTCAGCA 110997 28 100.0 32 ............................ ACATGGGTGCTTTTTGTTTTTGGTAATTATCT 111057 28 100.0 32 ............................ CGAATCACTGTGCCGAAATTGCACAAAGCGGA 111117 28 100.0 32 ............................ AAAATGAGAAAACCATTCGTTTTCTGCGAGAA 111177 28 100.0 32 ............................ TGTCGGCGATACTGCAATTGCGAGTTGTGAAA 111237 28 100.0 32 ............................ AAAAAACAAATTTTGTCACAAAATGAATATAT 111297 28 100.0 32 ............................ ACGTTCCAATAAGGTATGTTCTTCTTTCAAAT 111357 28 100.0 32 ............................ TTCACACCAATTCGGCATACTCTTTCTCCAAT 111417 28 100.0 32 ............................ GTAGTTTTATTGCTGAACATCGTCATTTTACA 111477 28 100.0 32 ............................ TGCATTATACATTCCAACAGAAATCCATTTAG 111537 28 100.0 32 ............................ CGAGCGTGCAGTTGGCGTTAGACGGCAAGCCG 111597 28 100.0 32 ............................ ACGAGTTTGTGCAATGATTTTAAGCATTGGCG 111657 28 100.0 32 ............................ AGTTGAAGTATCAGAAATTTTAATAAAGCAAT 111717 28 100.0 32 ............................ CGTGTAATAAGTTACAAATTCACCGTTTATAA 111777 28 100.0 32 ............................ TGATGTTAGAGATGGCTATGTAGGTTTTCAAA 111837 28 100.0 33 ............................ CCAAAAACTATAATTTTCTTCAAATTCCTTATC 111898 28 100.0 32 ............................ TGGTTCTTTTGGTTGAGTTTTTTATCGGCTAC 111958 28 100.0 32 ............................ TCAATCTAGCGACAATATGAAATCACGCCATT 112018 28 100.0 32 ............................ TAACATGCCTCGCACTTATGCAAGAGTTAGTT 112078 28 100.0 33 ............................ CAACAAAAAGCCAGTCATGGATGCCAAAGCTAT 112139 28 100.0 32 ............................ TTATAGATTAATGCGTAAATCTCACCATCAAT 112199 28 100.0 32 ............................ GAAAGCGAAAACGCAAGGCGAAAGCGCGCCAG 112259 28 100.0 32 ............................ ACATTGTTTTTATCTTGCCACTTTCTTGTTCT 112319 28 100.0 32 ............................ CGCGTAAAGTGGGATTTTTATTTTGAGAGAAG 112379 28 100.0 32 ............................ TATACTCACCCATTACTTTTTCAAAATAACGC 112439 28 100.0 32 ............................ ATTGGAATACGCAGTGTATTCTAACTCTACTG 112499 28 100.0 32 ............................ TTAATTTGCCGTTTTATCTCAAAATTATGAAA 112559 28 100.0 32 ............................ ACTATTGAAGCTACCTATGAACATCATCCAGT 112619 28 100.0 32 ............................ TACAGCGTCATAGTGCTTAACTTTATTTAATT 112679 28 100.0 32 ............................ TAGTGAACTCAAATCAATCTCACCAGTAATAT 112739 28 100.0 32 ............................ GTTTTTCCTTATGACAAAAACGGTATTCCACT 112799 28 100.0 32 ............................ GGTCGTAGCAGAATACGCGGGGACAGCTTACA 112859 28 100.0 32 ............................ TGTTAATCTACAATCAGTTGTAAAATTATTTT 112919 28 100.0 32 ............................ GACATTAATGTCGGAGACATCATTTAACAGAT 112979 28 100.0 32 ............................ ACAGTTCACGCACGCGAATGTTACACAACCGC 113039 28 100.0 32 ............................ GACAGGCACAATGCACGCATTTTTAGCACAAA 113099 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 113159 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 113219 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 113279 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 113339 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 113399 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGTAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTT # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 174877-173588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDB01000004.1 Pasteurella multocida subsp. multocida strain ATCC 15742 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174876 28 100.0 32 ............................ ATTCGAGCGGATACCGATTTTTTGATGAAAAT 174816 28 100.0 32 ............................ TTTATATCGGTAGGTAAGTCTGATCGGATATT 174756 28 100.0 32 ............................ ACAATTTGATATGAATGGTAATGTTTATTATT 174696 28 100.0 32 ............................ TTTTAATCGTTCCACAGTTGAAGTTAAGCCTT 174636 28 100.0 32 ............................ AAAAGCAGTGCGCGATTCTTACTATCGTAACG 174576 28 100.0 32 ............................ GTGAGTTCATAAAGGTGTGAATTAAGGGATTT 174516 28 100.0 32 ............................ AATATGTTTAAAAGCGATAGTTTGGCGAGTGA 174456 28 100.0 32 ............................ TTAGACAAAAAGCTGTTGCATTTGAAGCCAAA 174396 28 100.0 32 ............................ ATATATCTGCGTGGGTAAATGTTCCAATAATT 174336 28 100.0 32 ............................ ATTTGAAGATTTTTTGACTTTTTCACCGTCTT 174276 28 100.0 32 ............................ AGAAATACGCCACGTTTTTGATAAAATTTGAG 174216 28 100.0 32 ............................ AAAAGTGATTTGCACGCAGGATTTAGAAGTTG 174156 28 100.0 32 ............................ AAATTATGAAAAATCAATATTTAGCACTAGCT 174096 28 100.0 32 ............................ ATTTTCTACTTAGCTCCCTGTCGTATTCGTCT 174036 28 100.0 32 ............................ AAGGGGCGCACCCCTTGACCCCTTTAAACCGA 173976 28 100.0 32 ............................ ACGAACGACGACATAAGCGCATAGTAAACCCC 173916 28 100.0 32 ............................ AACTTTTGTGCAACTTCAGGCTTTAACTTAAT 173856 28 96.4 33 ....G....................... AAGTTGATAATTCATCCAATGTCATTTGTTCAA 173795 28 100.0 32 ............................ GAAGGTCAATAATCTAAAAGGGTCTATTCAAG 173735 28 100.0 32 ............................ AGTTCGTGAGTGCACTCTCGATGTTGTCGATA 173675 28 100.0 32 ............................ AGATTTGTCTATGAGTTCGACTTCGATAATGA 173615 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACTGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGACGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //