Array 1 1785733-1784958 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP021556.1 Bifidobacterium breve strain 139W423 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
   1785732	    33	 100.0	    34	.................................	CGTGACGAAATCGGCCAGAACATCGCGAAGGGGT  	
   1785665	    33	 100.0	    35	.................................	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 	
   1785597	    33	 100.0	    33	.................................	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT   	
   1785531	    33	  97.0	    34	...................A.............	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT  	
   1785464	    33	 100.0	    33	.................................	CTTTCATCTGATTGGAACGACGCTTCCGATTCT   	
   1785398	    33	  97.0	    35	.....................A...........	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 	
   1785330	    33	 100.0	    35	.................................	ATGGCCGTCAACAACGGTTCCGCGTTGGCGCTGGC 	
   1785262	    33	 100.0	    34	.................................	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC  	
   1785195	    33	 100.0	    35	.................................	TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 	
   1785127	    33	  97.0	    35	............T....................	CTGTACGGCAAGGCTCAGACCGGCATTGAGGGCTG 	
   1785059	    33	 100.0	    36	.................................	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC	
   1784990	    33	  81.8	     0	.............T...A.......G..CCT..	|                                   	
==========	======	======	======	=================================	====================================	==================
        12	    33	  97.7	    35	GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	                                    	       

# Left flank :   TCCGGCGATTTGGAACTGGTCGAAGGCGAGTACGAGCTCATCAACCGTGTGGAGGAGGAGAATGCCGCCGAGGCCGCTGCTTCGGTGTCCGCCGCTCTGCCGACCGGTGGCTTCGTGATCCTCGACACCGCTCTGGATGACGACCTGCTGGCTGAAGGCTACGCCCGCGACGCCATCCGCGTCGTGCAGGACGCCCGCAAGGCCGCCGATCTGGACATCGCCGATCGCATCTCCCTGGTGCTGACCGTGCCGGCTGTTGATGTGGCCAAGGTCGAGCAATTCCGCAATCTGATCGCCCATGAGACGCTGGCTACCTCCTTCGAAGTGAAGGAAGGCACCGAGCTGGCCGTTGAGGTCGCCAAGGCATGAGATCGCTGAATTGAGTTTGCTGAGTTGTCAATATTGAACGTTGGGACAGCCCAGTAAACTCGATACGCCAATTGATATGAGCTTGTCGTTGTGGTTGGGATTGTGTGGATTCCAGCCACAACGACAAGTTT
# Right flank :  GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC

# Questionable array : NO	 Score: 9.15
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-8.40,-8.50] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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