Array 1 55168-56656 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFV01000001.1 Pullulanibacillus pueri strain CGMCC 1.12777 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 55168 36 100.0 36 .................................... GATGAACAACGAGTTGTAGGATATTCGACATGGGGA 55240 36 100.0 35 .................................... TTTCAGTCCGGTAGTTTCAAAGGATTGCGGAAGGA 55311 36 100.0 40 .................................... GCATCAACAAACAGGTATTTTAGTTTAACCTCCACTATTA 55387 36 100.0 36 .................................... CTACGACCTATATTCAGCGCACGGCTAGCTTCGTGG 55459 36 100.0 36 .................................... AACTACTTGCTAAACTTATGTTGAATAGTCTCTACG 55531 36 100.0 35 .................................... CAGCAGTTGGCGCCAATCATCGGTAAAGTCGTTTC 55602 36 100.0 36 .................................... TCAGTTCCCCTTCGCTTTCACAATTCCAATATACCA 55674 36 100.0 36 .................................... GATGAACAACGAGTTGTAGGATATTCGACATGGGGA 55746 36 100.0 36 .................................... TGTATGTTTTGTTCTCCATTGCTTTATTTTGATGAA 55818 36 100.0 40 .................................... TCTTTTATATCGGAAACATGAACACCTGCCCCATTGGGAT 55894 36 100.0 36 .................................... CAACGTGTTTATCGCCAATTTCTACCCCTTGCATAC 55966 36 100.0 35 .................................... CATCTCTTAAATTTTTGAAGGACAATCGGGGCTGA 56037 36 100.0 36 .................................... GGTCATATCGGAGTATGTTAGCGCACCATCAGTTTC 56109 36 100.0 36 .................................... GACGCAGAAATAGTCGATACCAAGATCGGCTATATG 56181 36 100.0 37 .................................... TCAATGAATTGAATGGTGGTGCTTCACAAGATACTCA 56254 36 100.0 35 .................................... ATAAGGATATAGCGAATACTGACGATAAGACCAAG 56325 36 100.0 38 .................................... AGAGCAGACGGAATACCTTATGCAACTGATTATTATCA 56399 36 100.0 42 .................................... ATGCAAAAATACGGCATCATCAAGGACGGGGAATTGCTCTTA 56477 36 100.0 35 .................................... AACACTATTCCAGTTAATCGTACCTCTATCGTTCT 56548 36 100.0 38 .................................... GCGACACGGAAATACGCGCGATTGCACGCAGTCTTAAC 56622 35 94.4 0 ...........................-.......T | ========== ====== ====== ====== ==================================== ========================================== ================== 21 36 99.7 37 GTCCAAACAAAGAGAAGAAGCAGTAATAAAGGGCAC # Left flank : AAAGCGGCACTTAATGAAATTGTACATCAAAATCAAGATCAAGTGATGTTTGTTCAATTTGGTCCGGTAACAAGTAATCAACTTCAAAAGAAAATTTCAACAGTAGGGAGAGATTATATGCCGATGGATTTAGAAAAATTAATTTTCTAATAAATTTTATAATTTAGACGCATAATCTTGACTATTAGTGGGCATCCTTTATAATAGAAGTAATAAAGCTACATCTTAATGTTGTAGCAATTGATTGTTTGTGCATCGAGTGTAGAAACACTCTAACAATCACTTTTATTACATTTTTCTTCTTTTTGTTTGGACATGCTGTCGAGCACCTCTATAGGTCAAAATGACCGGGAGGTGCTCGAAGTGTTTAAAATAACAACATCTTTTAATTGTGAGTGTGTTTTTTATGGTTATTTTTGTTGGTATTAATCATTTGAAAATAAGGATGCTCGAAATTAAATTTGAAAAAGCTTTAGTACCAAGCGGTTCGAGCGTCTGCA # Right flank : TTACTAAAACAACTTAAATATTTAAAGGAAACCACGTCAGGTATTAACGATAGATTGCTCGGCGATCATTAATGAATTAGAAGCCTTAGATAAAGACAGTATGGCTAGTTATTTACATGGTTTTAAAAAGGCTGAACTCGTTGCCATCGGTCAATCTATTCAAATTGAACTTAAAATGAGAGCCACTAAAAAAGAATTAATTGAAAACATCCTTCATCACTTTAACTATATCCGATTAAACGAACAAATCGCCAATCGGAATAAGTCAAAGAAAATATGAGAGGTTAATGGGTTGATGAAGGGGAGTCAGAAACTTCCGACTCCCATTAAAGAAACCATTACTCGAAAGGCTACTAGACTCACATAATCTTAAGCACATTATTCCTCTATATCGAATGCAAGTTCTTTTTCTGTGGAACAATATTTTGGGTGGTGACAGGTACTCTTCCTTTGGTAGAAAAAAAGAAATACCATGTATGGTGATAAAGTGCCTTTGCAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAACAAAGAGAAGAAGCAGTAATAAAGGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 23618-23917 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFV01000009.1 Pullulanibacillus pueri strain CGMCC 1.12777 sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23618 32 100.0 34 ................................ CTGTTTAAAGAAGTCAATGTGATGCCAGCTACAG 23684 32 100.0 36 ................................ GACAATTTACCTGGATTATTATCCATGCGACGACCG 23752 32 100.0 34 ................................ TCCCAGCACCTTGGACCATAACCGCGTTCAACGC 23818 32 100.0 36 ................................ CATCACAGATACACTAAAACGAGAATGCCCTTGATT 23886 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 38 GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Left flank : ACGATTAAGTTTTTGCTGAATATTCGCAAAGGTGTTGACAGGGAATTCATTACCGCAGAGAATAGGATTATGGTCTTATTTTGGAAATTTTATTATATTCCTTATAACGTTTAATTTGTTTATTTTGTAAAAGGGTATTTTCATGAGGCGGGCATGAACTATAGTGCACAGATACGTGAAAGTGATCAACGAATGTAAACGATGAACTCCTCGACATTAAAGGATGAGAAAGATAGTCTGAGATTCCATCGATTCGGGAATAACAACAAAAACAAAATTGAATATATCGGTGTGAAAGAATTTATTGATATTGTGGGGCCGTGCCTTTTAAGTGCGAATGTAAAGTGAACATGTTTTGCTAGGGGGATTCGCACTAAATTCTCATTCATTTTATAACATATATTCCTATTTTTGTTATTCTTTTCTTTGGATAACACAGGGAATGGCCGATTTTCTAAAGAAAAATCCCATTTTTTATGAGATGTTAGCCGAAAATCGCT # Right flank : TTCCGGGATATTGATCTTTGGCCCGCTTTGAGTTGATCAAAACAAATAATTTATTGTTCAATTTGGAACGATCCTACTATTCTCGATAATTTTAAATTGAATGCGTTTACAAAAAGAGGTATAATAGTTTTATAGGATTTTACTTTTATAAAGTGATTTTCTATAAACAAGTACATAAGTAAAAACCTGTCCCAATAAAATATAGACAGGCTTTTGAACTTACCAATATAATAATAAATTTTTCAATCCGCGCCTTTAATAAAAGCGACAACTAACAAGCTAATTATAACATGAGTTTTTGGTTTTTTTAATTTTATAATTTTTACTTCATTTAATATTAAATTTGAATTGAGACTTATATTTTGAAAAAGATTGTAAAGATCAAGGAGCGTGAGGAAATCAAGAGGGAATGTCTTGAAATAAACTATAGTGGTCATCAAAAGCTCTCTATCCGACAAACACGGGTCAGTAGCTTATATGTATCAGAGTCAACGTTTTTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 32661-33424 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFV01000009.1 Pullulanibacillus pueri strain CGMCC 1.12777 sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32661 32 100.0 35 ................................ TCCTTTTTTTGCTTAAAAAACTCGCTAAAATGATC 32728 32 100.0 34 ................................ CTCACATTCCGGAATGGAATGGAAAAAGTATATT 32794 32 100.0 35 ................................ TCTAGCATTCCGTTTATTGCGCCATGATCTATATG 32861 32 100.0 34 ................................ CTCTGAGGAAAAGGCTGGAGCGAAATCAGCATCA 32927 32 100.0 34 ................................ GTTTCAATATTGCCGCTCGCGATGTGGCGAACTA 32993 32 100.0 35 ................................ CTTTATCTCTTGCGAGAATCATATAATTCCCGTCC 33060 32 100.0 34 ................................ TTCAAGCAACGCAACCGTTACGGATAACGGAACT 33126 32 100.0 33 ................................ ATAACACTAGGATTTAGTTCGACTCTTCTAGAC 33191 32 100.0 34 ................................ CTCGATTACTACGGTCGGCGACATGTTTTGGTAA 33257 32 100.0 35 ................................ GTTTTAAACTCGAATAGTAGCTGTGTTCCATCGGT 33324 32 100.0 36 ................................ GGGGTGGGGAAGACACATCTTGAAATTGCTGCAGGT 33392 32 93.8 0 .....................C.........C | G [33419] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.5 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GATTTAGATGGGTATCCACCATTCTTATGGAAGTAGAGTGATTAGATGCTAGTTGTGATCACATATGATGTGAGTACCGTTGATGGCGCTGGCAAAAAGAGACTGCGAAGAGTATCAAAGCTTTGTCAAAACTATGGACAACGTGTTCAGAATTCTGTATTCGAATGTGTAGTAGATTCTACCCAACTCAAGCAGCTTAAGTATGAGTTGTTGGAAGTCATCAATAGTGAAAAAGATAGCTTGCGATTTTATCGATTAGGTGATAATTATAAAACCAAGGTAGAACATATCGGTGTAAAAGATTCCTTCGACGTAGAAGGGCCTTTATTTATCTAGTTAAGGTGCGAATGTGAAGCGCACATCAATTACTAAGGAGATTCGCACCAAAAAAGACGGTAATAATATACTTTTATTTGGAAGAATGGAATTAAACAGGTTTATTTAATGGTCTATTATGTTATAAATGTAAAAATATAGGGCAAATATTACCTGTTTCCGCT # Right flank : CACGGGCAGCAAATCTGAAACTAAGCTTAAAGAAAAAAACTTCCTGTAGCGAAAACAGAAAGTTTTTGATGTCTTTCCATTACTTATCAAGCAGGTTATAGAGAAACTCCCATTTCTCAGTATCAAGCAAGTCCTTTTGAGAAATCTCGAGTCCGCCGCCTAGGAAGACCTTTTGATCTTGGATGGCGATGACCATAGCCTCAAAGGAAGAGGTAGGATCAACCTTCTTGTATACGTCACCTATGGTGGGCAAGAAGCCACTATTCACTCCGTTTTCTTCTAACTGAAGGGCATCGTCATTGATGTCACCTTCGCTTATTTCTTTATAATCAATGGGATGGCTATTTTCATCTCTACCTGGGACCATTAATAAATATTCGCTATGTTTTATGCCGTTAGATCGATTGGTAATAACCCCTTTGTTTTCTACTGTTTCAACGACTTCGATGGAGTTTAATGTATAATTATCTAGATAATCCGGACTTGGATTGGTAATTAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //