Array 1 19509-24631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKB01000029.1 Erwinia amylovora strain CTMF03-1 NODE_12_length_69342_cov_66.1481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 19509 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 19570 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 19631 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 19692 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 19753 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 19814 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 19875 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 19936 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 19997 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 20058 29 100.0 32 ............................. TCCTCCTGCAGGCGGAGCATGAGGATAAAGTC 20119 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 20180 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 20241 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 20302 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 20363 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 20424 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 20485 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 20546 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 20607 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 20668 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 20729 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 20790 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 20851 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 20912 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 20973 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 21034 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 21095 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 21156 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 21217 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 21278 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 21339 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 21400 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 21461 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 21522 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 21583 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 21644 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 21705 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 21766 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 21827 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 21888 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 21949 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22010 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22071 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22132 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22193 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22254 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22315 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 22376 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 22437 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 22498 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 22559 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 22620 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 22681 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 22742 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 22803 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 22864 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 22925 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 22986 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 23047 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 23108 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 23169 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 23230 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 23291 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 23352 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 23413 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 23474 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 23535 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 23596 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 23657 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 23718 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 23779 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 23840 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 23901 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 23962 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 24023 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 24084 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 24176 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 24237 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 24298 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 24359 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 24420 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 24481 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 24542 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 24603 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 84 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33671-37057 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKB01000029.1 Erwinia amylovora strain CTMF03-1 NODE_12_length_69342_cov_66.1481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33671 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 33732 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 33793 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 33854 29 100.0 32 ............................. CCTTCAGGCCGCTGGATAGATGCTAACCCACC 33915 29 100.0 32 ............................. CCGGCACCAAATGCTTATCACTGCCAGCGGCG 33976 29 100.0 32 ............................. ATTTCTGGATTAACACTCAGGCGGCTCATGAC 34037 29 100.0 32 ............................. GTCATTCATACGGGCTATACCGTCCTCCAGAT 34098 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 34159 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 34220 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 34281 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 34342 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 34403 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 34464 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 34525 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 34586 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 34647 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 34708 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 34769 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 34830 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 34891 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 34952 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 35013 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 35074 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 35136 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35197 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35258 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35319 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35380 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35441 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 35502 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35563 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 35624 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35685 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35746 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35807 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35868 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35929 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35991 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 36052 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 36113 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 36174 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 36235 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 36296 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 36357 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36418 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36480 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36541 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36602 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 36663 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36724 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36785 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36846 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36907 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36968 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 37029 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46517-46845 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKB01000029.1 Erwinia amylovora strain CTMF03-1 NODE_12_length_69342_cov_66.1481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46517 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 46577 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 46637 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 46697 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 46757 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 46818 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //