Array 1 65063-64546 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHM01000008.1 Lactobacillus acidophilus strain DS13_1B DS13_1B_8_length_65062_cov_56.897638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65062 28 100.0 33 ............................ TATATACATAGTTGTTTGTTTCAAAAATTGCCG 65001 28 100.0 33 ............................ CGGAATGTATGATAAAAATTGGCTATTTGCCTA 64940 28 100.0 33 ............................ TATTGATGCAACACCTAGCGCAAGTCAACCTGG 64879 28 100.0 33 ............................ CAGGGTGGTTTTAAGTACGAGATTGACTACGAT 64818 28 100.0 33 ............................ TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 64757 28 100.0 33 ............................ TATATGCGACTTATTTCTTACGATGAGATTCCA 64696 28 92.9 33 ............A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 64635 28 75.0 33 .....T..T.T.A.A........A.C.. TGAAGCACAATATTTTTAAAATAATTGGGCAAG 64574 28 71.4 0 ..........AAA.A......C.A..TA | C [64548] ========== ====== ====== ====== ============================ ================================= ================== 9 28 93.3 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : | # Right flank : ACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATGTTAACGGATTTAGGGATTACAAGCTATGAACTGAAGAATTATGAAGCCGACGATATTATTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 49-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHM01000034.1 Lactobacillus acidophilus strain DS13_1B DS13_1B_68_length_368_cov_85.804124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 33 ............................ CTTTGGCCATCTTCGGTCTTAAACTTAGCTAAA 110 28 100.0 33 ............................ CGGGTAAACAAGTCAGAGTTACTCGCAGCAAAT 171 28 100.0 33 ............................ TTAGGCGAAACCCCGAGAGCAATTTCAAGCACG 232 28 100.0 33 ............................ TAAAACGTTGAAGCTTATTGTCCGCTTTAACGT 293 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : ATGTGGAGGTGATCCTATATACATAGTTGTTTGTTTCAAAAATTGCCGA # Right flank : TGTTTACAACATCATGGTTAGAGCAAAACTTGTATTTTCTCCACGTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 50-1114 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAHM01000015.1 Lactobacillus acidophilus strain DS13_1B DS13_1B_15_length_20834_cov_60.377897, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 50 27 100.0 34 ........................... TACAAGTTTTGCTCTAACCATGATGTTGTAAACA 111 27 100.0 35 ........................... TAGCTATCCAAATATTAAATTTGCACTAGTTAAGG 173 27 100.0 34 ........................... TGAAGAATTTTATCTTCTAGGTGGCTTTTTTGTG 234 27 100.0 34 ........................... TAGAAATATTTGATTTTGATAGTGAAAAAGAATA 295 27 100.0 34 ........................... TTCAAGATCAACCATTCATTTGCCACGCAAATCG 356 27 100.0 34 ........................... TTATTTTCTGGTGTGAAAAATGCTGATGATATTG 417 27 100.0 34 ........................... CCCAAGATATAATTAAAAGAAAATATCGTAGTCA 478 27 100.0 34 ........................... CTTTGATTTGAGTTAAGTACCGGTGCATCAATGA 539 27 100.0 34 ........................... CTCTTTAATGTGACCAAAAGCGCTCGTAGCAGCA 600 27 100.0 34 ........................... CGGACGCAAAAGGGCAGAAAGCTAATTTATGACG 661 27 100.0 34 ........................... CTTGCTATGTCCGCTCTTGCTTGCATTGCAGTCA 722 27 96.3 34 ............T.............. CCCACGCCACATATTGTGTGCGGAATAGCCTAAG 783 27 100.0 34 ........................... CTCTGCCAAAATAGTAGCCGAATCTGGAAAATCA 844 27 100.0 34 ........................... CAAAGTGTCACAAAACTAGCACCTTTCATTAAAA 905 27 100.0 34 ........................... CAGAGTTTAGTCGTCGCAATGTGTGTCTCAATGA 966 27 100.0 34 ........................... CTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA 1027 27 100.0 34 ........................... CATAAAAATAAGAGGAAACCACCGTTTTCTCTTA 1088 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =================================== ================== 18 27 99.8 34 GGATCACCTCCACATACGTGGAGAAAA # Left flank : CATACGTGGAGAAAATCGGCAATTTTTGAAACAAACAACTATGTATATAG # Right flank : ACACTAAAGGAATCCCATCGTTAAGCTATTTTAAATTTACTAAAAAGCAAAATTTCTTTAGTTTGCATTTCCCCAACCAAATCATCGACACAATTATATCAAATATTCTTCTACATATATCTAGCTCATATAATAATTTTAAATTGCTATTATATTCACAGGATTACAAATAAACAAAATATGGGTAGCCTTATCAATGTCATTAAGTTAAGACATTATATAATATTAAAATCTCCCAAAGCACGATTACCAATATCATGCCGGTAGAAGCAATCCAGCAGATCAAGCTTACTTAAATAAGAATAAACATTGTCTTGTGCCTGAACTAAATTGTCAGCTTCCGAAATCACCATGAACAAGCGGCCACCATCACCCGTCAAGTTTTCCAAATCACCTTTAACATTGGCGTAATCGATATAGGTATTAGCACCTTCAGGCAGCTTGCCGATCTTAACATTAGGTGCTGGGTGCGTTGGATAGCCTTTGCTGCAGACAACCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //