Array 1 18903-18736 **** Predicted by CRISPRDetect 2.4 *** >NZ_VECC01000011.1 Bacillus pumilus strain DE0262 NODE_11_length_129210_cov_68.960231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18902 32 100.0 34 ................................ CGATGCCTTATCACATCTGCAACTTTGATATGTA 18836 32 100.0 37 ................................ ACATCAAGCGTCAGCTGATAAGTTCGAGCAAGGTCAC 18767 32 84.4 0 ...................GA......A.T.A | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 94.8 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTCTACTTGAGTGTGTGGATTGAAATAATGCCGTTGTTATGTTTTGGCGATCAGCAACCATGTCGCACTCTCCAGGAGTGATTTGAATTTTGAAAAACAATAGCAGCATCATACATCGTAATTGATATGAGTATCTAAATAAAGTCTATCGTGAGTAGGTACCTTGAAAGGAATATTGACAAATGCACTTCATATAAGTGTGAAAATCATAACTCTCGCATCTGATCCAGTAGTCATGTATTTAGTGAATTCAAAGTTGTTGCTGGAATAAGTATGATGAACAAGTTTCAATAGATTTAAATAAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGAAACATTCGCACCGTTTCATTCAATAAAATGAGAAAAAGTGTAAATTATTTAGAAGGGAAAACAAAATTCTATATAGAAACTTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTGGGGCGGAAATCGCAGTCGCACTCTACATGAGTGTGTGGATTGAAATACGATGATGTTGTGGACGTCGGATGTAAGGCGGTGTGGCACTTTATATGAGTGCGTGGATTGAAATTTGTAAAACTTAGCATTGAATTTTGTGGCTGCCCATGCACTCTACATGAGTGCATGGATTGAAAGAAGTAAGATCATTAAAACAAACAGAATGAATTGCAGTCGCACTTTACA # Questionable array : NO Score: 8.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19540-19306 **** Predicted by CRISPRDetect 2.4 *** >NZ_VECC01000011.1 Bacillus pumilus strain DE0262 NODE_11_length_129210_cov_68.960231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19539 32 96.9 33 .............A.................. CGAACAAGCCTACTAGATAAAGGTGTCCGCTAG 19474 32 100.0 35 ................................ ACGTATGGTCAATTCAATTTGATAGAGCGGATCCG 19407 32 90.6 35 ...A........T......T............ AATGCCGTTGTTATGTTTTGGCGATCAGCAACCAT 19340 32 81.2 0 ..........C..G.....AT.T........A | TTA [19312] ========== ====== ====== ====== ================================ =================================== ================== 4 32 92.2 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCGTAAGACTAAGTGCGAATGTGAGGTGAACATAAAGTCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : ACAATAGCAGCATCATACATCGTAATTGATATGAGTATCTAAATAAAGTCTATCGTGAGTAGGTACCTTGAAAGGAATATTGACAAATGCACTTCATATAAGTGTGAAAATCATAACTCTCGCATCTGATCCAGTAGTCATGTATTTAGTGAATTCAAAGTTGTTGCTGGAATAAGTATGATGAACAAGTTTCAATAGATTTAAATAAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGATGCCTTATCACATCTGCAACTTTGATATGTAGTCGCACTCTACATGAGTGCGTGGATTGAAA # Questionable array : NO Score: 6.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27764-27470 **** Predicted by CRISPRDetect 2.4 *** >NZ_VECC01000011.1 Bacillus pumilus strain DE0262 NODE_11_length_129210_cov_68.960231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27763 32 96.9 33 ...................C............ GTCTATCAGTGTTCCTTTCTCTACAATGATACT 27698 32 100.0 33 ................................ GATAATACGCCAAACGTCGCCCGTTCTCGTCAA 27633 32 93.8 35 ...........C.......C............ CGCTTTGTTAATTACCTCTTGATTTCTCACTCTAG 27566 32 96.9 33 ...........C.................... ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27501 32 87.5 0 ................A....A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.0 34 GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACAGGCTGATTTATCAAGAGGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGCTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAAAGTATATTTTATGGAGGAAAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTGAAAAATGTTACAATTAGGGCAGAAAACGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAAATCTGTCTCGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGAATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACATAAATGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAAACGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATTTCCATCTGCAACCGTTGTTTATATCCATCAAGTCGCACTCTACAAGAGTGCGCGGATTGAAATTTCGGTTTGTAACTATATTTCGCACCTCTTACAGTCGCACTCTACAAGAGTGCGCGATTTT # Questionable array : NO Score: 6.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //