Array 1 343449-345856 **** Predicted by CRISPRDetect 2.4 *** >NC_012582.1 Vibrio cholerae O395 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 343449 28 100.0 33 ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 343510 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 343571 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 343632 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 343693 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 343754 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 343815 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 343876 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 343937 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 343998 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 344059 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 344120 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 344181 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 344242 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 344303 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 344364 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 344425 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 344486 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 344547 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 344608 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 344669 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 344730 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 344791 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 344852 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 344913 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 344974 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 345035 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 345096 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 345157 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 345218 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 345279 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 345340 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 345401 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 345462 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 345523 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 345584 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 345645 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 345706 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 345767 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [345788] 345829 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.3 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //