Array 1 173626-176072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGOK010000007.1 Serratia ureilytica strain Four 7_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 173626 29 100.0 33 ............................. GAGATCGAAACATGCGATCCGTTCAATCAGCTG 173688 29 100.0 32 ............................. AACTTTCCCCTGCATTGCTGCAAGAATTTGCT 173749 29 100.0 32 ............................. AAGTGGTGACGCGCTCGGTGGCCTGGCACCTG 173810 29 100.0 32 ............................. CGAACAGCGACAGTGTTTTTTCCGCCTTTTAT 173871 29 100.0 32 ............................. GCCGCCGGCGGTGTTGGGCAAGTGTTGACCAC 173932 29 100.0 32 ............................. CATCTTCACCAAGTCTTGCCACCAGCGTTGTA 173993 29 100.0 32 ............................. TCAGCAAACTTATCAACTCCCTGCGCCTGGAT 174054 29 100.0 32 ............................. GTTTGATAGGTCTCCATTATTTACAGCATTTA 174115 29 100.0 32 ............................. CAGCGCTATCGCATCGTTATCGCTACGCTGAA 174176 29 100.0 32 ............................. GCCGTGAGAATCCTCGTCTGCGCCGATACCTG 174237 29 100.0 32 ............................. TCGCTTCCATGGTTCCTCTGTTTCCAGATCAC 174298 29 100.0 32 ............................. TGCCTCCATTTTTACCACGGACAATGTAGATA 174359 29 100.0 32 ............................. AAGCCAATCTATAGATATACCCAAATGGGTTC 174420 29 100.0 32 ............................. TCCCGCATCTGATCGTACATTGGACCGTCCAG 174481 29 100.0 32 ............................. CCCTTCATCGTAATCCATCAGTTCACCGGCGG 174542 29 100.0 32 ............................. CGCAGGCGTTGGCGTTCGGTGCTGCCGTATTC 174603 29 100.0 32 ............................. TTGTCGAGCTGCTGCCGCTGGATACCCAGTTG 174664 29 100.0 32 ............................. GTACGCCATCGGCAGTCCGGTCAGGTTGTAAC 174725 29 100.0 32 ............................. ACGTTCGCCGGCCAGGTGTTTTCACCGTGTCG 174786 29 100.0 32 ............................. TGGGTATTGCCACCAGCCCGCTGTAAAACCAT 174847 29 100.0 32 ............................. GTGGCCCACCCGATTCACGGGCGACCATTCAC 174908 29 100.0 32 ............................. CCACAGGCGACACCCACCGATCACTCAGATCA 174969 29 100.0 32 ............................. CATTATGAGCGAGAGAGAAGCATTTTTGGCGA 175030 29 100.0 32 ............................. CGGTGGAAAACCAGTTGGCGTAACGCTGTATC 175091 29 100.0 32 ............................. GATTTGCACGCGCTGATGCTGCCGGCACGCCG 175152 29 100.0 32 ............................. GGCCACCAGCTTGATAGCCCTCTTCCGGCGAG 175213 29 100.0 32 ............................. GCGTATGACGTGGCGTTACATGCGCTGTCGGT 175274 29 100.0 32 ............................. TTGAAAGCGGTGTTGTAGCGGTCATTCCGGTC 175335 29 100.0 32 ............................. CATGATGGCGGTACAGTATGACCGACAATTTC 175396 29 82.8 33 .CA.......T.T..A............. CCTCCTGCACCCACAGCCGATCGCCAACTTCGC 175458 29 86.2 32 ............TT.........G.G... AAACCTGTGTTAGATTTGCATGGATTGATAAC 175519 29 79.3 32 A.......T.G...T.T..........T. AGAAGTATACACGCGGCAAAAATTCAAATATG 175580 29 82.8 32 ......T....ATG.....A......... ACGGCCAGATGTTGGCGATTTATGCGCACGTC 175641 29 93.1 32 ............TG............... CTATTGATATTTCCCCAAATGGGCAAAGCCCA G [175658] 175703 29 86.2 32 ...........TTG.A............. ATATTATCTCAAATTGCGACAATGCCTGGTGT 175764 29 79.3 20 ......T.T..AT...T........G... GGCGATGATGACTTCCATCT Deletion [175813] 175813 29 86.2 80 C........A....T.T............ CGGAGGATACCCGCAGCAACGCTGTAGCTGAGGTGTTTCCGATAAACTGACAAGGCTAAGCCCTGTACAGAACGCCGTGA C [175817] 175923 29 75.9 32 ..A..T...A.TTG..............A AGATCGACGCCGAGAATAGGCTGCATCTGAAA 175984 29 89.7 31 .C.C.........T............... ACTCCGGCACGTGGACATCGGCACCTTGGCA 176044 29 86.2 0 ...........A.............G.AA | ========== ====== ====== ====== ============================= ================================================================================ ================== 40 29 95.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCAGCCCGGTGGATGTGGCCGGCGAAGATCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGATGAAAACCTGCGCCGTCAGGGGCTGGCTGAAAAACTGGTGTACGAAGGGTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTACTACGGCCGCTTCGGGTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATTCGCTGGCGGAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGTTTTTTCGGCGCCGTTTAATCGCTTTTAATTTTTAATATGTTGATAATTAATATTAATTTGGTGAAACAGAAGTTCACCAAAGTTTCTTTCTAAACTTTATTATAAATCAAATGGTTGCGTTTTCTTGTAAAGCGAAAATATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAAATGCATACTCTAAGA # Right flank : AATGCATTAAAAGAAATAATACTGAAGTTTATTAGTTTTATGCTAATTATATTGATTGCCATAAGTGGTTGTTGGTTTCACTTAAGATACCATATGCGATTTAAATTAATAATTTGTGCTTTAACTTTACAGTGTGAACTTAACTGGCTTTTTGTGTTTCCGAATAACTTATAAGTACCTTTAACCTGAGGGAAATGCTAAAAATACTAATAAACTATCTATGTCAAAATGGGATTTTTTATGGGGAGCGATATCCCTGACTATATGCGCTACTGGGGGAAAGCCAAAAGAGTTGATTTGCCAGAGGGGGATGATTACCACCTATTAGCTTATCATTGCCTGGATGTCGCTGCGTGCGGCCAGCAGATGGTAATTGATAATCGTTTTCATGCCGCCGATATTCTGGCCGAGATAGGCTTCTCTCGTGCCGATGGCGCATACTGGTTTGCTTATTTTCTGGCGCTACACGATATCGGTAAATTTGCGCGTGGCTTCCAACA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-52] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184965-185954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGOK010000007.1 Serratia ureilytica strain Four 7_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184965 29 100.0 32 ............................. TGATGAACCTGCAGGACATTGAGAAGGTTCGC 185026 29 100.0 32 ............................. GCTATCTGCTCAAACAGAGACTGCACGAAGGC 185087 29 100.0 32 ............................. CGGTACTAGTTTCCACCCATCCGGAATTTCCG 185148 29 100.0 32 ............................. CACCGGTCAACACTGAAAAGCTGAAGGCGCTG 185209 29 100.0 32 ............................. AATATAACGGGTTTCGCCGAGCCTTGGATCTT 185270 29 100.0 17 ............................. TATGCCGGGGCTGCCGG Deletion [185316] 185316 29 93.1 32 T.C.......................... CACGTCACAGGCCGCACGGGCATAGCTGATCG 185377 29 100.0 32 ............................. GGATCGGTGGTACGAATTTCATAGCTTCATCC 185438 29 96.6 32 ............................T AATCCGGGTGCGTCCAGTAGCCGTACTGGTCG 185499 29 100.0 32 ............................. CTCGCGGTTGTTGCTCATCCACAATTCCAGAT 185560 29 100.0 32 ............................. GTGAGATATCCCCTCAGCACACTTCTCGTCGT 185621 29 100.0 32 ............................. GCAGCAGGTAGCCGCCCATACGTCACTATGCT 185682 29 100.0 32 ............................. CGGTATTTGCTTGACCGGTTACGTGTCAAATA 185743 29 100.0 32 ............................. TGCGGTAGAGTTAACCGTATCGCAGTAATTGG 185804 29 100.0 32 ............................. AGGATTGGGGGAACGGTAATACAACCATGCTC 185865 29 96.6 32 ............C................ CAGGTTGGGGCGAGCAGCAGTGACTGCAGGTC 185926 29 69.0 0 ..G.......T.AA..AA.......T.TA | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.4 31 GTATTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTATTGGCAGCGGGAGAGATTGCAGTGCCACCACCTTTCGACGATGCGCAGCCGCCGGCGATTCCAGAACCTGTCGGTTTTGGTGATGTTGGTCACAGGAGCCGTAGCTGATGGGAATGCTTTTGGTGGTAACGGAGCAGGTTCCCCCCAGGTTGCGTGGCCGCTTGGCTGTTTGGCTTCTGGAGATCCGTGCTGGTGTCTATGTAGGGGACGTATCACGTAAAGTTCGCGAGATGATTTGGCAGCAAATTACTGTGCTGGCAGACGAGGGAAATGTTGTTATGGCCTGGGCGACGAACAATGAGTCAGGATTTGATTTTCAAACATGGGGAAAAAACCGGCGTGAACCGGTGGATCTGGATGGGTTGAGGTTGGTCTCTTTCTTACCTATTCAAGATCAATAAGTTATGGATCTTTAAAAATATGGAAAAGTTGGTGAAATTTTAGATTGGTAAAAACACCAATTATAACAATTGGTTAAATCTAGA # Right flank : ATTGGATGTGACGAACTGTATTGGCAATCAGGAAAGCGACAAACTTTCCCCTGTTCAGCTTCACACTGGCAACAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGACAGTGAAACGCCAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGTCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //