Array 1 17282-17049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMI010000320.1 Acidithiobacillus caldus strain BC13 Contig320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 17281 28 100.0 45 ............................ CGCGTCCACATTGCTGCGACCTCGCAAGAAGCGCGGGTGGCACTA 17208 28 100.0 39 ............................ TGCTCTGTTTCGCTCATGCTATTACAGTACACTGCTGAG 17141 28 96.4 37 ................C........... ATTGGCTCGTCGTCAATCCGGGCGCAGAGACCCTATG 17076 28 78.6 0 ...G............C..C.A.A...A | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 93.8 41 GCCATTGCAGGGGCTTGGTACTTGCAAG # Left flank : GGCGCTGCATTGGGCGGCTTGCAAGTGTGGGACGGCAGTTTTGCATTTGTCGGGAGAGGAAACGGTCAAATCCTGTGCGCTGTGTCGCGGCGTGTCGATGGTTACTGACCCAGAAGATGGCCAGATGCTGTATTGCGAAGACTGCGGCAGCACGGTAGATCGCAAGAAGAACGGTGCGGCCAATGCCTGGAAGCTGGCAAAGGAAAATCTGGAGCCTTTGGTGACGGAGTATTGGGAAACCGTGCTGACCAAAACGCAGGAAGCGGCGCAGCGTAAGGTGGAAAAGGCGCAGAAGATGGCGGCGGGTCGGAAAGCGCGTGCAGCCGCGCGAAAGGGAGTCGACGGCGCAGAGTCGGCAGATTCGCGCGTGTGAGGAATCAAGAGGTTAGACGATTTTATGCGGGGTATGGGCGAGCCCGTTGGTGTTGTGGATGCCGGTTCGCGGAAAGTGGCAGGAAAAGAGTTGCAAAGCCACAGGATGTGGAGGTAGAGTAGCAATA # Right flank : GCAAGAAAGTTTTGACACGCCAGAGTGGAATTGACGATACTTACAGATAAGTGAGTATGCTTCCGGATATTCATGCCCAGCTCCACCCCAGAAAAAAACCGTGAACACGTCAACACGCATCGCGCCCGGATGCGCGAGGCGGGATACGTGCTGCTGAGCAACGTCTGGATCCCCCAGGCACTGCACAAGGCCATTGCCCGACGGGCTAAGCAGGAGAACAAACCGATCTGGGTGATCGTAGCCGAAGCCCTGGCCAAAGCATTTTCTGAAACATAGAAAAAGGCGCTCTGGCTTGACAGTCCGGGTTTGCATTTACACACTTACAGGTAAGTATGTTTGGTGTTTGTTTTGGATACGGCACCAAGGGGATAACAGGAGGTTCCATGTATCCACCGCTGATTCGGCGATTGTTGCAGGACCGGGGGGCGGACCCCGACGACGCGCTCGATCTGTCCACCATCTCGCCCCCGTTGGGGCCGCAAGGATTCCTGGGCATGAAG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATTGCAGGGGCTTGGTACTTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1949-2215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMI010000036.1 Acidithiobacillus caldus strain BC13 Contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1949 28 100.0 33 ............................ GAGGTGCAGTCGAGGCTCCCGCTACCAGCCGAC 2010 28 100.0 33 ............................ TAATGATGCTGAAAAGTTGGGGCAGGTCTGGTC 2071 28 100.0 33 ............................ TCCTTGCAGTCCGCATTTCGCATTTGCTGCGTT 2132 28 78.6 27 T......T...A............GG.T TCGCATTTCGCATTTGCCGCGGGCATG A [2142] 2188 28 82.1 0 .............CG.......G.T..G | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.1 32 GTCGTCCCCGCGTGTGCGGGGGAAATCC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGTCGGTACAAGGCTTTTGGCTGCGGAATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGTCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGG # Right flank : GCACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGGACCATACGGGTGGTGCAGGAAGCCATGAAAGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGGAACCCTCCCAGGCCGGAGCAACGGCAAAATGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGATCCCCAACGCGCAGGGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3277-4273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMI010000036.1 Acidithiobacillus caldus strain BC13 Contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3277 28 100.0 33 ............................ GTGGGCATCTCCCAATCGCGCGCGCAGGTGTGC 3338 28 92.9 33 .......................G...T GGCTTCGAGACCGACGCGACCGTGGTGCAGGCC 3399 28 100.0 33 ............................ GGGATCAGCGGCGTACTCATCCACTTGTGGGCC 3460 28 100.0 33 ............................ TTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 3521 28 85.7 26 ..........T........T.....C.T GATCACCGGGACAAAACCGGGCGGCG Deletion [3575] 3575 28 89.3 32 ...........A..T..........C.. GCTCCGGACTCCGCTCGTACCCGTCATTCACC 3635 28 96.4 33 .G.......................... TCATCGCTATACCAATGCGCAAGGGGCGGACCC 3696 28 96.4 33 .G.......................... CGCCTTGAGCTCCCTGTTCCGCCATGTGGAGGA 3757 28 96.4 33 .............A.............. GGGCGCTGCGGTGGGGGATGACATTTCCCAAAA 3818 28 96.4 33 .............A.............. GTACGCGGCTCATGCACACCATTCCAGCGATGG 3879 28 100.0 33 ............................ GAGAAAGCAGGAGATTGGAGAGCGTTCTCTATT 3940 28 92.9 33 ..........T..A.............. CCGAGCCAGCACCCGACTCTTGATAGCGAATCT 4001 28 85.7 33 ..A..........AT........G.... GCAACCGTACCGGACCCCGCGCCGCCCACGCTA 4062 28 85.7 33 ..A..........AT........G.... AGTCGATATCAGCGGAAACGCTTCGGACATTGC 4123 28 82.1 33 .C...........AT....A...G.... ACAAGCGGCCAGGTCTCCCGTCATGCTCAAGAA 4184 28 96.4 34 .............A.............. GTACACCATGGCGCAAATAATCGACTTTCTGGCC 4246 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 93.9 33 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : CTTGACCAAGGAGGATGCGGAGGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTACTGGCTGGTCTGCGCTACTTCGCCAGCGATCCGGTCATCGGTGCGCACAAGGCGGTCGGGCGCGGTGAGCTGGCGATGGAACTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGCCCCCAAAGCGCGGAAGCCGGAACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGTCTGCTGGCCGAGCATCTATCCGAATTCGACCGGCTGGCGAAGGCGGGTTTTCCGGGGATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : CGGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTAGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCCGCGTGCACCTGCAGGTATTCCTGGTCGTGCTCGACCAGAAGCATCCCGTAAACCTGCAGGGGCTGGCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGACCGTGTTGCGGACGTTTGCCCGAGCACGCGAACACCGTTTTCTTCGAGCATCTGCACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGACCGCTTTTCCATGGTGGCCTCCTT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //