Array 1 12248-12481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEV01000017.1 Lactobacillus gasseri strain 497_LGAS 245_12485_148538_76+,70_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12248 36 100.0 30 .................................... GCTCTTTTTCCCACTTAGAGCGAGCTGTAT 12314 36 100.0 30 .................................... TAGGTCTGTATTAAATACATTGCTACTCAT 12380 36 100.0 30 .................................... TAAGACCAGTGCTTGGCAAAAAGTTTGGTG 12446 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GCTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGAATATATTGAAGGTCTTAATGAAGCGGATCGTAATGAAATATTAAAAACATACCATAAACTAGAAGGGGTAATTCAAGATTCGTTGCTACTTGAAGAACTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAATTTTTAAAGTTAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAACCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAATTGTAATCTCCATTCTATACCTATTGCTTGTAATGTAGCTCATTACTTAAATTTAGCTCAGGTAGGGATGTTAAATGATCTGTTAAAAGAAATGAAGTTGAAATTAATTTTAATAGAATTCACATCTGCGGATTTTCTGGTTTTTCCAAAAGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTATTAACTGTCTGATTAAAAACTGATTATAAAATTTCG # Right flank : TAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 15-645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEV01000005.1 Lactobacillus gasseri strain 497_LGAS 176_45209_520030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 .................................... TAAGCTTCATACCAAGATTTATAGTATTCA 81 36 100.0 30 .................................... GTTCTACCTAAAAGATAATCGGTAGTAGTG 147 36 100.0 30 .................................... TTTACTTTTTGAGATTCATTAGCTCTTTCA 213 36 100.0 30 .................................... TTAAATTGTGCTTTCTTATCATTAGGCACA 279 36 100.0 30 .................................... CTTAAATCAAGTTCATTATACGATAAAAGC 345 36 100.0 30 .................................... CATGAATAAACGTTATCACGCCAGCGCCAG 411 36 100.0 30 .................................... ACGGCTGGCATTTAACACACTGGTTTGGTG 477 36 100.0 30 .................................... AAGCATTTTATCATTTAATACTTAAGAATA 543 36 100.0 30 .................................... ATCACATCTTTTAAGCTTGTATCCATTACA 609 35 91.7 0 .T........................A......-.. | TA [638] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 GCTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CAAAAAGTTTGGTGG # Right flank : CGTAATTACACTACTGGTCCATTGCTTTTGCAATGTGCCTTTTTTATTATCTTCCAAACCGTTTTTCACCCTACAGTGCAAAAGTCTATTTTAAATGTAAGTGCCTGTTTTATACCATATAAGTGTCAAGAAAAATAATATTAATGGATAATTTAAAAATGACTAAGAATGTTTTATTGGTATGTGGTTCAGGTGCAGCATCAGATTTTATGGCTGCTCACATGAGAAAAACATCAAAGAAAGTTGGTTTAGATTATAAAATTCAAGTTCGCAGCGAAGCAGAATTAGGTGACTATGCAGATCAAATTGCTGCCTTAATGTTGGGTTTCTTACTTAAAGACGGAGTTTGGTACGATTAAATTACAAGTACTTGACAAGGTAAAGTAATTTTAATGAAACTAGATTATTATTCAATTTCCATTTGATTTTATGGATTACATGAAATTAGACAAGCAAAGAATCATCGCGGATCTTTTCCTCAGGGCGCGGTATGCTCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //