Array 1 95324-94806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMV010000005.1 Vagococcus fluvialis strain UFMG-H6B NODE_15_length_175890_cov_5.756883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95323 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 95262 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 95200 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 95139 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 95078 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 95017 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 94956 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 94895 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 94834 28 75.9 0 .A.........C..T....T-.G.....C | C [94809] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122517-121024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMV010000005.1 Vagococcus fluvialis strain UFMG-H6B NODE_15_length_175890_cov_5.756883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122516 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 122455 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 122394 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 122333 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 122272 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 122211 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 122150 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 122089 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 122028 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 121967 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 121906 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 121845 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 121784 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 121723 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 121662 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 121601 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 121540 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 121479 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 121418 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 121357 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 121296 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 121235 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 121174 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 121113 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 121052 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //