Array 1 1279-2029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000041.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig41.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1279 30 93.3 31 ............................TA GCGGGACGTGGGCGGGGCGCTGAGTGCCGCC 1340 30 100.0 31 .............................. GCCCGAGAATTGACGGGCTTTTATGCGGTCT 1401 30 96.7 31 .............................A CCGACCGGCCGGTCCAGTAGTGCCTGGGGCT 1462 30 96.7 31 .............................G CCGGGAAGAACCTCCTGGTACGCGGGGCGCC 1523 30 100.0 31 .............................. GCAGGACCGCGCGTCCTACGACTGCGACCGC 1584 30 93.3 31 ............................TC TGCGCGACCTCCGGCACGGCGCGGCCGCTCT 1645 30 96.7 31 .............................G GGCCGCCCCCGCCGCAGCCGTCCGCCCCGCT 1706 30 96.7 31 .............................G GGGTGCCGGACACCGTCGTGTCGGCGTGGGC 1767 30 100.0 31 .............................. GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 1828 30 96.7 31 .............................C ACTCGGCGATCCCCATACGGACACGGGAGTT 1889 30 96.7 31 .............................C AGGCTGTCCTCATGGGTGGCCACCGGCTCAG 1950 30 96.7 22 .............................A CGGCACGGCTGCGCGCCGCCCT Deletion [2002] 2002 28 83.3 0 .....-......A.........-C.A.... | ========== ====== ====== ====== ============================== =============================== ================== 13 30 95.9 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAAGCCCGATCACCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTACCCGACGGCCTCTGCCACCCCTGCCACCACGCCCACACCCAAGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCCAGGCGATGGGTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCCGCGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGTACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6040-6416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000041.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig41.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================== ================== 6040 30 100.0 31 .............................. ACACCCTGACCAACGTCCAGGCGTTCCAGAA 6101 30 100.0 31 .............................. TGGCCTGCACCGCGAGCGCCTGCTGACCGAA 6162 30 100.0 31 .............................. CGTCCTCGACGGACACCTCGCCCTGCTGCAC 6223 30 96.7 31 .............................G GCACCGCTGGAATCGACACCCAGCCCACATC 6284 30 93.3 72 .........................C...A AGCAGACGGGCGAATACTGCGACCTGTACGGCTGGTCCCCACGCCACTGCGGTGAAGCCCTACGCCTCACTG 6386 30 90.0 0 ...C........................GG | G [6403] ========== ====== ====== ====== ============================== ======================================================================== ================== 6 30 96.7 39 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CACTCGCCTTCACATCACGGAGTTGGGCAAGCTGAGCGGGGTCGGTCACTCGCTCGCCCTGAACGAGTACGTCGGTGGTGCCTTCGACCTCGTAGAGGGTGGGGCAATCTCCGTCGTCACTGGTGGTACCGAGAAACCTGAGAACCGTCATGGCGCCCTCCATGAGCACTGAGTGGAAGCCCAGGATGCGATGGATGGTGAGGGGACGCCGCCAGGTTGCGCGGAATTGCAGATCGCGGACGTAGCAGGGACGTTGCGCGCAACTGGCAGAGGCAGCACTAACCAGCGTACGCAAAGCCTCACCACGCACCCGCCAAGCCACGGCAGATGGCGCACCAGCTCTCGCCCCGCCACCAGACCGGCCGAACCAGCGACAGGCACAATGACACCAGCCGCACTGCACTCGCGTGACCGCTGAACACGAAAGGCGAGGAATGCCGGTTTCCCGAGAAGTGAGTAAAAACCGCCGTCCTACCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGCACAACGGGTGGTGGCCGCATCAGTGACTGATCAACGGCCGCCAACGCTTCAGCATGTTGAACTGTGCGATCGCGGAGAACAGTTCGACCAGGCTCTCTACCGGCCTTGAACCGGCGCGCTCGCATGTTGAGGTCTCGCGTATCCCAGCTCAGAGCGCCCCGGTCGGTCACTTTGGGCATGTAGGTGGCGTCCAGGACTCGGTCCGAAGTGAGTAAGTTCGCCTGACGGCTCGTTCAACACGCTTCGCGAGCGGAACGTGCCAATGGACATCGTCGCGCTTACGAAAACACTGGCTGAGCAGGGCGTAGCGGTGCTGTTCAAGGCCGACGCGGAGCGGATGGCAGAGGGGCAAGCCGTGGAACTTCGTCGCCAGTGAAGCGCCGTTGCATGAGGCGACCTTGTGCCCACCGATGCCGGGTCTGCGGAGCAACGATTCGCACTGTGCTCATCCCGCCTGCGGGAGCTGGGCTCTTCGTTCCCCGAGTGAGGAAATCGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4540-5460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000047.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig47.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 4540 30 96.7 31 .............................G TGGTGGCCGGCCGGTAGCCGGCGGGGAGCGT 4601 30 100.0 31 .............................. ACCGTCTGCTGACCCAACTGGTCGGAGCGCA 4662 30 100.0 31 .............................. AGCCCCAGCCCCAGTCGAGCGCGAGTTGCCG 4723 30 96.7 71 .............................G GCATCGAGCACCACGAGGCCTACGACCAGGGGTGGTCCCCGGCACCTGGCCCGGATGAACGCCTACTTCGC 4824 30 96.7 31 .............................T CCACGCTCATGCCGACACGGTCGGCGATGAC 4885 30 100.0 31 .............................. GCCTGCGGGGCTCGTCCTTTTCCGGCTCCGG 4946 30 96.7 31 .............................T TCACGGCCGCGGGAGTCGTGTCGATGTAGCT 5007 30 96.7 31 .............................G CCACCTGGAAGACCATCGGCATACCGACCAG 5068 30 96.7 31 .............................T CCTTGGTCACCGCCTTCACGGCGGCCTCGAC 5129 30 93.3 90 ...........A.................G CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGTCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 5249 30 100.0 31 .............................. GGGGCTCCAGGATGCCGTAGGACACGGCCAC 5310 28 86.7 31 ........--..............A....A TCCCAACTGCCGTCACAGCGTCAGCAGTTAC 5369 30 93.3 32 ............T................T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 5431 30 83.3 0 .......................A.CAG.A | ========== ====== ====== ====== ============================== ========================================================================================== ================== 14 30 95.5 39 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACAGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCTTCCGCCGCCCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGAGTAGGCACACCGCACACCGGGGTCCAAAGCCTCGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGACATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCGAGATATGCCAGCTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAGAACCGCAGGTCACGAACA # Right flank : ACGAATGGTCGCGCGGCCCGCACCGTAGCCCGGACGAGGAACAGCCCACCGGGTCAGGACGTTTGGTCGTCGCCCTCGATGTCGTCTTCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCTCCCGCACTCGTCGTCCACAGGAACCACAGGCTCGCGGGCGGTTCGGTCTCGGCGGTCCACAGGCGGGCGGCGTGCTCGGTGGTCTCGTCGTGTTCGCCCAACTCGCACAGCACGTACGGCTTGTCGTCCAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.53, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11532-12476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000047.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig47.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11532 30 100.0 31 .............................. GCGGCTGGGACATCAGCATGAACGCCGACGG 11593 30 100.0 31 .............................. GGTCGCCGGTCACCAGGGCGGGGTCGTAGCC 11654 30 100.0 31 .............................. GGCAGGATGCGGGACGGGGGCCGATTCGATT 11715 30 96.7 31 .............................T ACTGGCCCGACGACCGCGCCCCGCACGATGC 11776 30 96.7 31 .............................A TCACTGAGGTTGCCCCGGAGACCCCGTGACC 11837 30 96.7 31 .............................T GTCGGAACGGGAACGGCACCCGGCCCGGCAG 11898 30 96.7 31 .............................T ACCTCCCCGACGCACTGCCGTCCCCGGCCGC 11959 30 100.0 31 .............................. GTGATCAGCCCGTCGACCTCGTCCAGGTCGA 12020 30 96.7 31 .............................T GCGGCTGGGTGACGACCGAGGGCGGGCTCTT 12081 30 96.7 31 .............................C GACTCCGGCTGTTCCTGCCCGTCCCCGTTCG 12142 30 100.0 31 .............................. CCGAGCGGCTGCTCGTGATCCTCCCGATCAC 12203 30 93.3 31 .........................C...C GGTCCGACACCGGGTACACGGCCCACCCCCT 12264 30 93.3 31 ..........G..................C TGCTCAAGCACGTCCTGGACGCCGGGAACCG 12325 30 96.7 31 .............................T CGGCGGCAGCGCTACGCCCCGCCACGGAACG 12386 30 100.0 31 .............................. CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 12447 30 76.7 0 ...T......T..............CTAAT | ========== ====== ====== ====== ============================== =============================== ================== 16 30 96.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GACAAGATCCCGCCCCACCTCCCCGCAACGGCAGGAGTCGACTCGCCGGGCGCCACGGAACCCGCCCACGAAACCCTCGTCGAATGCACCAACTGCCGCCGACCAGGCCCACCACAAGCTCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCACACCGCACCCCGGGGCCCACACCTACGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGCATGGCCCCTTTGTAGAGGAAGGCGAGATATGCCGGTTTCTCAACAACACAGCAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGA # Right flank : TTGTCCCAAATCGAGGAGCCTGCGGACCGACCAACGCAGTCGGTGCAGTGAGTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCCCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCTACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGGAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCGCTCATAGGGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTGACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATTTTGCTGAGCAGTTGGCATGGCGCCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 13633-13967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000047.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig47.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13633 30 100.0 31 .............................. AGGAACGTAAGGACACGGACGCGCTGCAACT 13694 30 96.7 31 .............................C CCTCCGTGATCGTGGCCGTCGTGGACGACGA 13755 30 96.7 31 .............................T GGTCGAGCTGGACGACCGGGAAGACGACGAG 13816 30 96.7 31 .............................T GCGGCGGCGGCGTGACCCCCACGGTCTCGAA 13877 30 96.7 31 .............................G TCATGACCGTACGCAGGTTGTACGACGCCGC 13938 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CGAGAGCTGGCCTTCCTGCATGACCGCACGCGCGTCAATGAAGGCCGCAAGCAGACCTACGGCACACAGATCGCCGGCGTGAAGGACGGGGCACCAGTTCCGTGGCCTTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCAAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCCCGTCCGGCGGGTCAAGCCCTGAGGCTCACCAGCCATAAGCATGATCCCCCGGACGGGACCTCCACCGAGCCCCTCGTGAGGTGCAACAAACGCACCCCACCCCGGGGCCAACGCCTACGGAGGACAGAGCCTCACTTCTTCCATCGAAGCTGAGCCGGCGAAGCTGGCGGCGGACAGAATGGCATCAGCCGAACCACACGTGACCGCTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : AGGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGTCCCCGCACGCGGGTTCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCCCCGCCGTACGCGGTGGAGGCTGTGCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCGCCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCGCCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72592-70360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000008.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 72591 30 96.7 31 .............................A TTGCGCAGACCCGTCAATGTTCCTACGAAAA 72530 30 96.7 31 .............................T TCTCCTGCGCACCGCGCTGGTGGCCGTCCCA 72469 30 96.7 31 .............................A CGGCCGCGCTCGTGAACTGGCGGATCAACAC 72408 30 96.7 31 .............................G TCTTCGCCCAGCTCGTCAACGCGATCCCCAC 72347 30 96.7 31 .............................A GAACGTGCCAAGTGATCTACGGGCTGTGTGT 72286 30 96.7 31 .............................G GTGCCGACACCCTCGGCAACCCCACCCAGAC 72225 30 100.0 31 .............................. TCTGCCACACCCCACGACGCGCCCTCGCGCG 72164 30 100.0 31 .............................. GGCCCGTCTTCACGATCACCGTCCAGTACCG 72103 30 96.7 31 .............................T ACAGGGTCTACGAACCCGACCCGGAGCCAAA 72042 30 96.7 31 .............................T TCCTCCATGGCTTTGGCGGTGTTGCCGCTGC 71981 30 100.0 31 .............................. GCGGTAGGCGATTACGTTGTCGCCGGGCTGA 71920 30 96.7 32 .............................G CCTCCGCGAATGCCGACGTCATGGCCTCGGTG 71858 30 96.7 31 .............................T GGGCGTACACCGGCACCAACGGCGACGGCAT 71797 30 100.0 31 .............................. GCGGGTGATGTGGGACGGGTCGGCCCCCGAG 71736 30 96.7 31 .............................T CGTCCAGGGCATGATCAACGGGGTTAGGTCT 71675 30 96.7 31 .............................A GAACTACTCGTTCAGGGGCGTTGACGACGCC 71614 30 96.7 32 .............................T TGACCTTCCGCAGGTTGCCGAGGCCGGCGGCG 71552 30 96.7 31 .............................G CCCGGCCGACCGCGTCCGCCCCCGTCTTGAA 71491 30 100.0 31 .............................. TCCTCGCCGAAAAGGCGTTCGACGGCGTGCT 71430 30 100.0 32 .............................. CGGAGCACGAGAAGCCTGACCCCGACCCGGAC 71368 30 100.0 32 .............................. TGCCGCTGCCGAAGGTGCTGCCGTACCCGGTC 71306 30 100.0 31 .............................. AGGCGGCCAGGGCGAGGCCGACCCCAGGCCC 71245 29 93.3 32 .................-...........G TGAAGCCTGACAAGGCGAACAGCGGCGACAAG 71184 30 96.7 31 .............................T ACAGAGAGGGGCGCCGATGCCGCACGTCACG 71123 30 100.0 31 .............................. AGCTGCTTCGGGTCTCGGCGCACGAGGGCCA 71062 30 100.0 31 .............................. GTCCTGATCCTCAGCTCCCGGCACGGGCTGC 71001 30 96.7 31 .............................T CGGCCTGTGTCAGGCGACCGTGTTCGGACCA 70940 30 96.7 31 .............................G ACAATCCGCGCGCCATGATGCTCCCCTCCCG 70879 30 96.7 32 .............................T CCTCGGCGGACGCGTCGCAACCGGGGCAGGAG 70817 30 100.0 31 .............................. GGATCATGGTGCCTTCGAGGCCGTCCAGGAG 70756 30 93.3 31 ...........C.................A GCAGGGCGTCATGGTCGAGCCCGTCCGCCAG 70695 30 96.7 31 .............................G ACCCCTTCCCCGGCGCCCGCGACCGGGCGAA 70634 30 100.0 31 .............................. CCGACAACCCCCGGGAAGAGCTGGGTGACCT 70573 30 96.7 31 .............................G GGCTCTTCGCGCCGAGGACCCAGCCGGGCGG 70512 30 96.7 31 .............................G CCGTACGCGCCTTCCGGCGCGCACAGGGGTG 70451 30 86.7 31 ............AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGCCGCT 70390 30 73.3 0 ..........TC.GG......C....TT.G | T [70372] ========== ====== ====== ====== ============================== ================================ ================== 37 30 96.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GACAAAATCCCACCCCATATCCCCGGAACGGCAGAAGCCCGCTCGCCGGACGCCAGGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCATCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCGCGCACGCACTCACGGCGGCGAGTCCACCATCCCCACTCCGGATGAGGTCGCCGCTGTCAAAGCCCACGTAGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCGCCAGGCGATGGTTTGTTGTTGGGCAGGGGGGGGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAGCCGCTTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGCGGTGCCGCTTCGGTCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 77321-76987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIT01000008.1 Streptomyces griseus subsp. griseus strain NRRL F-2227 contig8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77320 29 96.6 32 .......T..................... CATCTCGGTGCGGCCGTCGATGGTGTGGGGGA 77259 29 100.0 32 ............................. CGAGTCATGGTGTGGGGCTCGGAGCCGGTGCT 77198 29 100.0 32 ............................. GTGGTCACCGAACAGGCCGTGGACCTGCCGTC 77137 29 100.0 32 ............................. ATCGGGTTCTTCGGCCAACTCCCGATGAGGCG 77076 29 100.0 32 ............................. GGGGTCAGCGCGACGATCAGGTCGCCGAAGGC 77015 29 86.2 0 ..................A...C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCGCCCTGCGCGAGCGAGCGCTGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTGGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACTCCGCCGACCGACACCCCTCGGAAGTGCTATCGCCGGGCGTCCTTCTTCCGACCGATCGCGGCGGCCGGGGGCGGGGCCCCGGGGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGACGGATCCCCCGGGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAACCTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCAAGAACGACCCCTCGGCCGGATAAACCCGCAGGCCGCGAAGG # Right flank : TCCACACCCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATCGCGATACGCACGCGCACGCCCCCCATCCGCCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //