Array 1 66648-65153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRED01000011.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000190 CFSAN000190_contig0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66647 29 100.0 32 ............................. ACTATTCGGTCAAAACAGCCTCCATTCTCAGC 66586 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 66525 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 66464 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 66403 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 66342 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 66281 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 66220 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 66159 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 66098 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 66037 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 65976 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 65915 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 65854 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 65793 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 65732 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 65671 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 65610 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 65549 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 65488 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 65426 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 65365 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 65304 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 65243 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 65182 29 96.6 0 ............T................ | A [65155] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16836-16136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRED01000024.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000190 CFSAN000190_contig0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16835 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16774 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16713 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16652 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16590 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16529 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16468 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16407 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16346 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16285 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16224 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16163 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //