Array 1 559909-558557 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJD01000004.1 Yersinia pseudotuberculosis strain NCTC1103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 559908 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 559848 28 100.0 32 ............................ AAATTATCTATAAACATAAACTGACTTTGAAT 559788 28 100.0 32 ............................ AATTCGGTATCGGTAAATTCATCAAGTATTTC 559728 28 100.0 32 ............................ AGAATAATCAACGCCATTAGGGTTTAAAGGTA 559668 28 100.0 32 ............................ GCATTGCTTCAGATGCCGGTCAGGTTGTACGA 559608 28 100.0 32 ............................ CCCGTATTTTTGAGTGCCAGCTGCTTCCTGCA 559548 28 100.0 32 ............................ AAAAACAGCATCAAGGAGTACCAAAGCCTGAT 559488 28 100.0 32 ............................ TACGCCATCGGCGGGGCGACCTGCGCCCGGAA 559428 28 100.0 32 ............................ AAAAGGCATTAAACCCTGTTTGAACATTGAGA 559368 28 100.0 32 ............................ ACAATATTTTTTCCACTAATTATCATATTAGA 559308 28 100.0 32 ............................ CTGGGCCTCGCTGCTAAAATGATCGTGCTCTT 559248 28 100.0 32 ............................ ATTTCCGCCAGATTCCATAGCGCTATTACTAA 559188 28 100.0 33 ............................ CAAACGGATTACAAAAATGGGGTGTATTTAGCA 559127 28 100.0 32 ............................ ACAAACATCAGGACAATCACAGCAACAATCAC 559067 28 100.0 32 ............................ AACGCAAGAGGAAACCGAACAAATGAAGAATG 559007 28 100.0 32 ............................ ATCTTTAAACATATTTAAATCTATTGCTAATT 558947 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 558885 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 558825 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 558765 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 558704 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 558644 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 558584 27 89.3 0 .....................CC.-... | T [558559] ========== ====== ====== ====== ============================ ================================== ================== 23 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGCAACCAGAAACAAACTGGTACAGCAGGCAGTGGAGAGGGTGAATCCCTATTTTAATAAATAATATTAAGGGGCAATATCGGCCCTATTTAAATATATTTTTTATAACAACGAACAGAACCAGCAACATAATAAATCCGATGATCCCAAAAATAATACTAGTGTTACTGTCCATATGCATATTGCCTTTACCGGCCAATAGGTAAGCAGCAACGACAAAGGGAATGCAGAGAGCGGGGTGGATGGTGATCATCACGGCAGCGAGAATTAGGCATACTATAAAGATTGTAGATGTCATCGATCTCTCGTTTTGAGTTGAATTTCAGGGGCAATTTAGGGGCAAATTACAAGTTCAGGGGCACAAAAAAGGGCAGTAAACAGGTAAGTTACGGTGGCTTAAGGTTGATAGCGTTAGCTTGCAACACATTGAAATAAAATAATAAGATATGAAATTCAAATACTTTCATTTCATTGTGTAGCTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 581102-581671 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJD01000002.1 Yersinia pseudotuberculosis strain NCTC1103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 581102 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 581163 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 581223 28 100.0 33 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATACA 581284 28 100.0 32 ............................ TATGGTAAAGCCAACTTATCCAGACATACCAC 581344 28 100.0 32 ............................ TATTTCGGAGGTGCTAAATAATGGCTCGTTAT 581404 28 100.0 32 ............................ ATATTCATCCAGCGGGACCGCTGATGTTTATT 581464 28 100.0 32 ............................ GGATTGATCGGGTGATTCTTCATGCGGCATCT 581524 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 581584 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 581644 27 85.7 0 ...................-A.A.C... | T [581668] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 266650-266798 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJD01000001.1 Yersinia pseudotuberculosis strain NCTC1103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 266650 28 100.0 33 ............................ ACTTTCGGAGACAGTGATTCTACGACCGATGCA 266711 28 100.0 32 ............................ AAGCCAACGACGGATCTCTTCAACGGCAATGC 266771 28 89.3 0 ...........T............T.G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCCTTTAAACACCAGACAGCACAACAACCCAAGAGGTTAGTTACTGTCCGCGGACGGATAAGTCACAGTTTCCCCATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATCTATTAGGATATTTCAGACATTTATACAGGATATTTCTGATCTCCATCACAGGGGGACCTCATTAGATCACGTCAATATTCTTTTTTTAATTTACCTAATAACCTCATTTACTTAATAACCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGCGTCATTTTTACCCTTTGGCGAAAGAGTTATTTTATAAACAGTTTGTTACCCGTATTATCTTACT # Right flank : AGGGTTACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGCGCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGCACTAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTAAGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //