Array 1 606-1098 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHQ01000030.1 Thermus thermophilus strain IB-21 NODE_30_length_15240_cov_56.1196_ID_4707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 606 36 100.0 39 .................................... CCAGGGCAACGCCCGCACCATCGACGCCGATTTCCCCAA 681 36 100.0 42 .................................... GCCGGATTATCTCCTCCTGGTACGGGCGAAGCTCAATCATCT 759 36 100.0 40 .................................... GCCACCTCGCGATGGCCTCCTCGGGGCTATCCCCAATCGC 835 36 100.0 34 .................................... CACTTCTATCGGGTAGGGCTTGGGAAGATGCCAA 905 36 100.0 44 .................................... CCGCTGGTTTTCAAGTACCAGTAGTGCGTGTGTCCCATTAAAGA 985 36 100.0 42 .................................... CGCGAGTTCCATGTACTCCTGAAGCAATGGGTACCAAGCCTG 1063 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : ACACATAAATCCTTACACGACCGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGGAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCTGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCCTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 5117-5831 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHQ01000030.1 Thermus thermophilus strain IB-21 NODE_30_length_15240_cov_56.1196_ID_4707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5117 36 100.0 39 .................................... CATCCTCTAGGTCAAAGCCATCAGGGAGGCGGATGCCGA 5192 36 100.0 40 .................................... TTGCGTCCCGAATGAGCCCGAGCACGGCCTCCAGGAAGGC 5268 36 100.0 40 .................................... TGTGGCGCATGCGGCGGGAAGGCGGTGCGTGGTAGCGCGT 5344 36 100.0 39 .................................... CGAACTCTGGGTCTGCCCCAACCCTGTGAACTACCATGA 5419 36 100.0 38 .................................... TATCTTTGGGCTAGGTGGACCGGGTAGCTTCCCCGAAT 5493 36 100.0 41 .................................... CATGTGCCACCTCCCTAGATTTCGCGGTAGGTCCATTTTCG 5570 36 100.0 37 .................................... CTCACAATCTCGAACTCGGGGTCTGCCCCAATCTTGC 5643 36 100.0 39 .................................... GGATGCCTAGGGCCGTTAACAAAGCCAAAAGACCGACAA 5718 36 100.0 42 .................................... GCGTTCCGCCAGTCCGGGGACTTCTCGGACTGGACGGCCTTA 5796 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 14840-14654 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHQ01000030.1 Thermus thermophilus strain IB-21 NODE_30_length_15240_cov_56.1196_ID_4707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14839 37 97.3 38 C.................................... CCCGTACGCGCTGGCGTTCACAATCGCCTTCCAGTCAA 14764 37 100.0 37 ..................................... TACCGGGTGGTAGGCGTGTCCCCGGCGGTTAGGTTTG 14690 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 99.1 38 GGTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CTTGCAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTGCTGGAGAAGATGCTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACCAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTA # Right flank : CTGAAAAGCTCCTGAGTACGGACGTTCTGGAAGATCGCAACCTGCGCGTATTCGGTTTCCAGAGGCCTCAGCGCTTAGAGAAAGGCATGATCTGGGCTTTTCCTGAGGACCTGGAGAAGGCCTTTGCCGATTGGTTACCTGGTACCCTGCCGACCCCTTGACCAGGGCCAAGGGTGGTTTGGGGGTGGTTACGGTGCGTAGGGGCGTCCTGCAGCGCTGGAGGGTCTGGCCTTCCCCGCCCAAGTCCCACCCGCCCAGGGGGCGGAAATCCCAGGCCTCCCAGGACAGAGCACCCTAAAAGCACGCTAGCGGCTCACTCCCACGCTAAACTTCTAGCTTAGCAAGTACCTTTTGCAGGGCAGGGTCCTTCTTGGCCTCGGCCTTCAAATCCTTGGGGTTGGCGAGAAACTTCTTCTCCTGGAGGGCCAGCCGGAGAACGGCTGTTTCCTCAGGGGAGCAGGGATACTATGACCAGAGCCCTTTTTCGCAGAAAGTCCGTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //