Array 1 587832-590636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002371.1 Streptococcus thermophilus MTH17CL396 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 587832 36 100.0 30 .................................... TGGTCAGCAATTGCTTTGAATGACGCTGGT 587898 36 100.0 30 .................................... TTCTATATCATTCAAGTTAGTATTAGTAGT 587964 36 100.0 30 .................................... AACATATTATCTTTGGCATGATGAAGAGTT 588030 36 100.0 30 .................................... TGAAAGCTTGCGATAAGGACACGAAGTCTA 588096 36 100.0 30 .................................... CAGTACAAGCTAAAGCTTGGGACTGGGCTT 588162 36 100.0 30 .................................... CATTGATGAGTATTATTGAGAAACTTCACG 588228 36 100.0 31 .................................... TTTTTGCGCCAAGTCCGTGCAACCTTGACCA 588295 36 100.0 30 .................................... CTTTGCGTTCGGATATAGTGAAAGGCGGGA 588361 36 100.0 30 .................................... TGATTATCAAAAATCTGGACTTGCTGACTT 588427 36 100.0 29 .................................... CACGTTAGTCATTCTAACAGTAAACACGG 588492 36 100.0 29 .................................... AAAGAAGATGTATGGAGCAGCAGGTATCG 588557 36 100.0 29 .................................... CCTGACATCAAATTCACTGATGCCAACTG 588622 36 100.0 30 .................................... GGTGTACCAGTAAACATTAGGACTACGCTA 588688 36 100.0 29 .................................... TTTTGGGCTTTCAGCCCTCTTTTTTTCAG 588753 36 100.0 30 .................................... TGCCTTAACTTCAATGGGAAGCGGACCTAG 588819 36 100.0 30 .................................... GCACTAATCAAGTTAGCGGCAAACGTAGCA 588885 36 100.0 30 .................................... AGAAAGCATTTGGCAAGGTTGTTGATTTCT 588951 36 100.0 30 .................................... GTAAACTATTACCAATAGACCACGAAAACT 589017 36 100.0 31 .................................... CAGACATGACCCAAGACAAATATGCTGAGTT 589084 36 100.0 30 .................................... CCTTTTTGTTAAATTAATTTATCGAAAGCA 589150 36 100.0 30 .................................... AAAGTTTAATAGAATCTGCCAACTTAACAC 589216 36 100.0 30 .................................... GGAAGTCAAATGATTAATTTTAAATTACGA 589282 36 100.0 30 .................................... ACATTCTACATGAAAGCGCCCTTTAGCGCA 589348 36 100.0 30 .................................... ATATTATTAGGAAGATACATGATGACTATT 589414 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATGTCATTT 589480 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 589546 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 589612 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 589678 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 589744 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 589810 36 100.0 30 .................................... GACTTTTGGGTTCTCGATATACTGACGCGA 589876 36 100.0 30 .................................... CAGGAATATGAATCCCAAATTGTTGCAAGA 589942 36 100.0 30 .................................... TTGTCAATACCGACAGCCATACCTTGGCCG 590008 36 100.0 30 .................................... AAATGGGTTATGCTGCTCGATGTGCGTCCC 590074 36 100.0 30 .................................... GCGCGGTATCTATTAGGGATATCCCTGACA 590140 36 100.0 29 .................................... TAACTTCTTTGATTTTTGCGCGAGACTTC 590205 36 100.0 30 .................................... ACACATCAAACTTTTTGGTCAAGCAGCGGC 590271 36 100.0 30 .................................... CAAATTATTCAAATTGTCAAGCATTACACT 590337 36 100.0 30 .................................... ACGTTTACTTGTCTTGTCTATTGGGATGAC 590403 36 100.0 30 .................................... TGTCAGCATCAAATGATGGATTTGTAATTG 590469 36 100.0 30 .................................... GCGGATGAAACACAACTTCAATTGTATTCA 590535 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 590601 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGAGTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 836209-836743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002371.1 Streptococcus thermophilus MTH17CL396 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 836209 36 100.0 37 .................................... TTTTCAAAAGTCCATTTTGGTGTTTCTGTTTGCTTGT 836282 36 100.0 35 .................................... CTTGTGTCAGATTGTGACGGGCTCGAAGTTCTTTG 836353 36 100.0 37 .................................... TTCCAATCGTAAATAGGATAAAAGTTGTAAACATTAT 836426 36 100.0 35 .................................... TGACGGTCTTCATATTTACGTTCATTTTCTTCCCA 836497 36 100.0 35 .................................... CTTGGTTTGTTTAACACGTTCTAACTCACCCTTGA 836568 36 100.0 33 .................................... GCAATTATCTGATCTAGTGGTAATCCGTGGTCG 836637 36 100.0 35 .................................... AATTTGTAAAATTCGTTTTCAAACTTGAAATAGCG 836708 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 97.9 35 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGACATCGCTTCCAGAAAAGTGTTAGACTAAAAGCTCATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTTTGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGGTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCTTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1311614-1311115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002371.1 Streptococcus thermophilus MTH17CL396 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1311613 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 1311546 36 100.0 30 .................................... AAACCGTTCTACAATTACAAGAGTTCGGAA 1311480 36 100.0 30 .................................... TAGAATCAGAATCACTTAGACCGTAAGTAA 1311414 36 100.0 30 .................................... TACGGCTATTGGTTTTGTTTATCCATATGT 1311348 36 100.0 30 .................................... TAGGACATCGTTTTGTGGAACGTGTTGTTT 1311282 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 1311216 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 1311150 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGATATTGAAACTTCTAGCACATACGTAGAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTTTGGGGCAAATAACTCTGTCACAGAAAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTGCTTCAGCAATGAACAGCGCGGCCTCACGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACACAGCAGCACCTGGAAACCCTGTTGGAAATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAAATCTACGTCATATAGAACGATTCCCTCGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGAAAGCACAAGAAAGTCAGATGCGAAGCGCGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCATCACAGATACCGGAAACGGTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAAAATCGCACCGTTAACACTCAA # Right flank : CATCACAGATACCGGAAACGGTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAAAATCGCACCGTTAACACTCAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGCATTGACAGGCGATATCGTGTTGATGTCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCACACTTGCACAAGTATGTTTCAATCTTATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 1312876-1311718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002371.1 Streptococcus thermophilus MTH17CL396 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1312875 36 100.0 30 .................................... CATATTTCTCGTTGTTCTCTCGTGCTTCTT 1312809 36 100.0 30 .................................... ACTGAGGTTTCAAACGTCGTAGCAACGTGC 1312743 36 100.0 30 .................................... TGAATATCTCACGAAGTCTTACGATGTATC 1312677 36 100.0 30 .................................... TTTGTCCTACACCGTTACCATAGTTTTTAA 1312611 36 100.0 30 .................................... GTTTGGGATGCAGCGTAATTATTAAATTAG 1312545 36 100.0 30 .................................... ATATGATTTCAAACAATATTTACTTATAAT 1312479 36 100.0 30 .................................... GCTATGATGATTTGCTTAGCATGTTTAATT 1312413 36 100.0 30 .................................... GCCGTACACTATCATGGTTTCAACCGACAA 1312347 36 100.0 30 .................................... AGAGGATTGGCTTAAAACGGTCGCTAGTAT 1312281 36 100.0 30 .................................... CATTACTGATACTGGTGCAGGTGGCTACTA 1312215 36 100.0 30 .................................... AATGGGAGAACAAGGACCTAAAGGAGACCG 1312149 36 100.0 30 .................................... TGATATTGAAACTTCTAGCACATACGTAGA 1312083 36 100.0 30 .................................... TTTTGGGGCAAATAACTCTGTCACAGAAAA 1312017 36 100.0 30 .................................... TTGCTTCAGCAATGAACAGCGCGGCCTCAC 1311951 36 100.0 30 .................................... ACAGCAGCACCTGGAAACCCTGTTGGAAAT 1311885 36 100.0 30 .................................... TAAATCTACGTCATATAGAACGATTCCCTC 1311819 36 100.0 30 .................................... GAAAGCACAAGAAAGTCAGATGCGAAGCGC 1311753 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CATCACAGATACCGGAAACGGTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAAAATCGCACCGTTAACACTCAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTTAGCCTTGAAATGGCACGTAGTGAACTTAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAAACCGTTCTACAATTACAAGAGTTCGGAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAGAATCAGAATCACTTAGACCGTAAGTAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTACGGCTATTGGTTTTGTTTATCCATATGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAGGACATCGTTTTGTGGAACGTGTTGTTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTTCAATTGAATTGAGTATCTCGAGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //