Array 1 348056-349488 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBV01000002.1 Streptomyces thermodiastaticus strain JCM 4840 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 348056 29 96.6 32 ............................G GAAGCGCTCATCACTGGTCGTGCGTATGGTCT 348117 29 100.0 32 ............................. TTGCCGTCCTGGATGATGATGAAAGTCTCCAT 348178 29 100.0 32 ............................. CTCACGGCGCCGCTGGTGGCGTACGGCCAGGC 348239 29 100.0 32 ............................. GGCACTATCGTCGGCTTCACCGGGCCGCATGC 348300 29 100.0 32 ............................. TGGTGCCAGGTGGTACCTGACGCCACCGCAGA 348361 29 100.0 33 ............................. CCTTCCTCTCTCCAAGGGTTGCAGCGCCGCACC 348423 29 100.0 32 ............................. CAGCCCCGCCCGCTGCATCTGCGCGCAGATCC 348484 29 100.0 32 ............................. GCGATAGAGGACCTGGTCCTGTTGCCGGGGCG 348545 29 100.0 32 ............................. AGCCCACGTCATTCACCCCGACGGGAGCGTGT 348606 29 96.6 32 ............................T CCTTCGCGGCCGCCATCAGCGCCCGACCGATG 348667 29 100.0 32 ............................. GTCCAGTACGTCTCGCCCGGGGTGACCGCATA 348728 29 100.0 32 ............................. GAGCCGTCCGAGGCGTACGCGGACAGCAGTCC 348789 29 100.0 32 ............................. TTCAACTACATACGGAGCCTGCTGAAGGACCC 348850 29 96.6 32 ............................T GTTGTCGTCTTTGACGGCAGTGGGAGTGGTGG 348911 29 100.0 32 ............................. CCTGCTCGCCCACGTCCCCGCCACCGCCCAGC 348972 29 100.0 32 ............................. GACTGCCAGAACGTCACCGGGCACTTGTGCGT 349033 29 100.0 32 ............................. CAACCACCCTCTTTAGCCGGGTCTCAACGTGG 349094 29 100.0 32 ............................. CGGACCGGGAACGCCGTCAACCTCGCGAGGTT 349155 29 100.0 32 ............................. ATCGCGGCCACCGTGATGGCGAAGCTGATCCC 349216 29 100.0 32 ............................. GAGTACGGGACCCAATTCCGGAAGCTTGGCCT 349277 29 96.6 32 ............................A GGACCTTCGCCATCGGCGCCACACAGTTGGTG 349338 29 100.0 32 ............................. GCGGCGCACGCGTACAGATCACCGTTGGCCTT 349399 29 96.6 32 .................T........... TCACGGGCCAGCTGGAAGCGGCGTCCGACGAC 349460 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACGGCACCGACGCCGGAGCGCACTGGCGAGAGGAGCCGATCTGGTGACCGTCATCGTGCTGGCCAACTGCCCCTCCGGGCTGCGCGGCTTCCTCACCCGCTGGCTGCTCGAAATCTCCCCGGGCGTCTTCCTCGGCTCCCCCACGGCTCGCGTACGCACCATCCTGTGGGAAGAGGTCCGCCGCCACCGAGGCCAGGGCCGCGCCCTGCTCGCCTACCAGACCGACAATGAGCAAGGCTTCACCTTCGCCACCCACGACCACGCGTGGCACCCCACCGACCATGAAGGCATCACCCTCCTCCGCCGCCCGTCTCCCCGCACACCCGCATCCTCCGCCGAGCAGCAACCTGGGCCCGGGAAGCGGGGGTGGAGCAAGGCAGCCAAGAGGAGGCGATATGGCCGTACTTGACCCCAGGGAGAGTAATTCGAGAAGTATGGCCGTTCTCGCAGAAGTGAGTAAAAACAGAAGCCTCTCCGTGTAAAGCCGCACGTCAGGCTCT # Right flank : CTCACGGGCCAGCTGGAAGCGGCGTCCGACGACGTGGTCCCCGCGCGTGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGGGTGGTCCCGCGGACACCATCGCGTCGACGCACATGTTCCCGTGGTCCCCGCGCGTGCGGGGGTGGTCCCCGGCCGCGTCGCAGGAGGGGCGGCATCGAGGGGTGGTCCCCGCGCGTGCGGGGGTGATCCACGGTCAATCGGCAAATCCTCTTCGCCGATCACGTGGTCCCCGCGCGTGCGGGGGTGGTCCCACGGCCTTGCGGCCCTGCACCTCGATGGCGGCGTGGTCCCCGCGCGTGCGGGGGTGGTCCCCGTGCAGAGCCGGCAGACCAGAGACCGTCGCAGTGGTCCCCGCGCGTGCGGGGGTGGCCCCTCCACGCACCGAAGCCCTCTCCGCCCCCTGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 349682-349954 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBV01000002.1 Streptomyces thermodiastaticus strain JCM 4840 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 349682 29 100.0 32 ............................. CGGCCGCGTCGCAGGAGGGGCGGCATCGAGGG 349743 29 93.1 32 ........................A...A CGGTCAATCGGCAAATCCTCTTCGCCGATCAC 349804 29 100.0 32 ............................. ACGGCCTTGCGGCCCTGCACCTCGATGGCGGC 349865 29 100.0 32 ............................. CGTGCAGAGCCGGCAGACCAGAGACCGTCGCA 349926 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCATCGCGGCCACCGTGATGGCGAAGCTGATCCCGTGGTCCCCGCGCGTGCGGGGGTGGTCCCGAGTACGGGACCCAATTCCGGAAGCTTGGCCTGTGGTCCCCGCGCGTGCGGGGGTGGTCCAGGACCTTCGCCATCGGCGCCACACAGTTGGTGGTGGTCCCCGCGCGTGCGGGGGTGGTCCCGCGGCGCACGCGTACAGATCACCGTTGGCCTTGTGGTCCCCGCGCGTGCTGGGGTGGTCCCTCACGGGCCAGCTGGAAGCGGCGTCCGACGACGTGGTCCCCGCGCGTGCTGGGGTGGTCCCTCACGGGCCAGCTGGAAGCGGCGTCCGACGACGTGGTCCCCGCGCGTGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGGGTGGTCCCGCGGACACCATCGCGTCGACGCACATGTTCCC # Right flank : CTCCACGCACCGAAGCCCTCTCCGCCCCCTGATGCCGAACCGGCATCACAGCCGCCCCAACAGGTCTTGGACGCCGATGCCCGGCTGGGCGGAGGGTGAAGGCGTCAACGCGATGCGATGCCTGCGAGGAACAAGAGGGTGCAGGACATGAAGGTTTTCGTCACCGGTGGCTCCGGTTACATCGGCAAGGCGGTCATCCGCGAGCTGCGCGCAGGCGGTCACACCGTCCGGGCGCTGGCGCGCAGTGAGCGGGCCGCGCAGTCCGTCGAGGCGCTGGGTGCCGAGCCGGTGCGCGGCACGCTGTCGGACCTGGACGTGCTCAACGAGGCGGCCGCCGGCGCCGAGGCGGTCATTCATCTCGCCCAGGCCGAGACCGGCGAGGAGGATCTGGCCGCGGCCGGGGCGATGCAGGACGGCATCGGGGCCGGGACGTATGTGCACACGGGCGGCACCTGGGTCTACGGGGACACCGACGGTGTCGTCGGCGAGGACGCCCCGTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 114159-113153 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBV01000008.1 Streptomyces thermodiastaticus strain JCM 4840 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 114158 30 100.0 31 .............................. AGGTCTACGACGAGGCGCACCGGCTGTGGGA 114097 30 100.0 31 .............................. GTGGCTCGTCGAGCACCAATAGCTGAACACG 114036 30 100.0 31 .............................. GGACCCCGCAGTACAGGGTAGTGTCGCTTTT 113975 30 96.7 31 .............................C CTAGGGCCAAGTCGCCGGTCAGCGGGTGAAT 113914 30 96.7 31 .............................A TGACCCGGATCACCAGCCCGGCAGAGTTCGC 113853 30 96.7 31 .............................A GCCCGCGGTCATCGACGAACTCGCCGCCGAC 113792 30 96.7 31 .............................C GCGCCGAGCGCCCGCGTCACCGCCGCCGTCG 113731 30 100.0 31 .............................. GCGAGAATGCGGGACACAGAAGACGAAGACA 113670 30 96.7 31 .............................C GTACTGGTGGCTATGACTCTGGTGGCTGGCT 113609 30 96.7 31 .............................T GCATATCTTCCGCAATCACGTCGCCGTTGTA 113548 30 96.7 31 .............................T AGATAAATCGTAAATCGTGACAGGAATAAGA 113487 30 100.0 31 .............................. GTGTCCTCAGCGCGCACGAGCTGAGGCTTCA 113426 30 100.0 31 .............................. CGTCGACGCTCCCCGTGACGTGGGTCAAGGC 113365 30 96.7 31 .............................T CACCGACGCACACCGCGCCGGCTACATGCTC 113304 30 100.0 31 .............................. CGAAGTCGAGGCCGCGGGTGTCGAACGTTGC 113243 30 96.7 31 .............................C ATCCGGCCATCTGGTCAGTGCGTGTGGTCAG 113182 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 17 30 98.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCCTCCTTTCCGCACCAGTGGCGAGGTCAGCCGCAGCCGGGAGGACAGCAGAGCCGGCGCCGTCCGGCCCTTGGCGCACAGCGCACCACGGTTGACCGGGAAGTCCGCGCGCTCGGCCACCTCCACCCCCGCGTCCGGGCCGGCGGTCAGATTTATCCCGCATTGCAGGGCACAGTACGGGCAGTGCGTGGGCGTAGCGGAAGTCGGCATGCCGCCCAGCCTGCGCGTCGTGTGTTACGTGACCGGACGGCCCCTGTTACACGTCCGGCACGGTGAGCTCTTCGGGGGTGGGGGGTTGTGGTGAGGTGTGCAGCCGACACTCTCGCCCCCTCAGGTTCGGCGACCAGAGCAAACGGCAGACGCCGGTGTGAGGACGACCCTAAGATCGGGGCTCGGATAGGCCTCCATGACGACAATCAGGCGGTGTGTACCTTTTGCCGGACTCGGTGAAACTCATGAAAAACACGGCTCGCGCCTCGTGAACCCGCAGGTCGCGCACT # Right flank : CTCACACCCCCCACGCCCCACCCCGTGACCCCCCGGAAAACCCTCGTCACGTCCCCGCAATCACCACGCAACGTCCCGCCGGGAGGATCCCGGTATGACGGTGTCGATCCCTCCGCGCGACGGACACCTGCCCGCCCTGGTCCTGGTGGCGCACGGCAGTCGCGACCCGCGTGCCGTGGTCACCGTGCGGGCGCTGCTGGACCGTGTCCGTGAGCTGCGCCCCGGCCTGCCCGTGCACCTGGGCCACATCGAGCTGAACGAGCCGTTGCTGCCCGACACGCTCGCGCGGCTGGCGGGCACCGATGTCGTCCTGGTGCCGTTGCTGTTCGGCTCCGGTCACCACGTCAAGCGGGACATCCCGCGGATGGCCGCCGCCGCACGGGCCCACGCCCGGGTGGCCGCCCCGCTCGGCCCGCACCCGCTGCTCGTGGAGGCGCTGCACGACCGGCTGACCGAGGCCGGATGGCGGCCGCCGCACGATGCGGACGAGCGCCGCACGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //