Array 1 163380-161842 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSJ01000005.1 Salmonella enterica strain BCW_3946 NODE_5_length_279526_cov_2.7188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163379 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163318 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163257 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163196 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163135 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163073 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163012 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162951 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162890 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162829 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162768 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162707 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162646 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162585 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162524 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162463 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162402 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162340 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162237 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162176 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162115 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162054 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161993 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161932 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161871 29 96.6 0 A............................ | A [161844] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181493-179512 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSJ01000005.1 Salmonella enterica strain BCW_3946 NODE_5_length_279526_cov_2.7188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181492 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181431 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181370 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181309 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181248 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 181187 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 181126 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181065 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181004 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180943 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180882 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180821 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180760 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180699 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180638 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180577 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180516 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180455 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180394 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180333 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180272 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180211 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180150 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180089 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180027 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179966 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179905 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179844 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179783 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179722 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179661 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179600 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179539 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //