Array 1 10319-10766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZX010000163.1 Pseudomonas aeruginosa strain CriePir312 NODE_163_length_12026_cov_84.122952, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10319 28 100.0 32 ............................ GGTGTTCGACGCTGCCGAGCGGTTGCCGGTGT 10379 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCTACCGATCG 10439 28 100.0 32 ............................ TGGAACTGGCACAACGCATCTGGTTCCGCGCA 10499 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 10559 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 10619 28 100.0 32 ............................ GCATGCTGTCCGGCCTGTTGATCGGCCCGCTG 10679 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 10739 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6323-7370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZX010000075.1 Pseudomonas aeruginosa strain CriePir312 NODE_75_length_20031_cov_78.410370, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6323 28 100.0 32 ............................ ATGGGGGTAACGCCGATCAGGTGAGCCAGGGC 6383 28 100.0 32 ............................ ACCACCGTCTGCTCAACCGAGCTGTCCAACCG 6443 28 100.0 32 ............................ AGCATGAGCGCGACCTGCGCGCGCAGATCCAG 6503 28 100.0 32 ............................ ATCAGGTCAGCGTCCCAGCGAATGGTGTCGAG 6563 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 6623 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 6683 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 6743 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 6803 28 100.0 32 ............................ AGAAACGCATCCAGCGATACGAAGATGCACTC 6863 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 6923 28 100.0 32 ............................ AGTCTTCGGCCTTTTCCCACCAGGCTTGCGCG 6983 28 100.0 32 ............................ TTCGCGCTGGCCAACGTCGCGGCATCACCATC 7043 28 100.0 32 ............................ TGCAGCGTGTGCAGGCAGTCGATGGCCGCCCT 7103 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 7163 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 7223 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 7283 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 7343 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAAGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGATGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16633-15885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZX010000075.1 Pseudomonas aeruginosa strain CriePir312 NODE_75_length_20031_cov_78.410370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16632 28 100.0 32 ............................ AAACCGCCAAGCTGCTGAGGGCCAATGAGGCC 16572 28 100.0 32 ............................ TCACCCTCATGCTTGTAGGTGCCGCCGATCTC 16512 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 16452 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 16392 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 16332 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 16272 28 100.0 32 ............................ TATGCGCCAGGCCGCGTGCTTGTGTGCGGTGT 16212 28 100.0 32 ............................ TGGCTGTGGTGCCGGCAGTCCGGGGAGGCGTG 16152 28 100.0 32 ............................ AAGTGCTGGCACAGTACAGGGACAAGCGGTCC 16092 28 100.0 32 ............................ ATGGCGCACCCGAAGGAAACCCGCGACGCCCT 16032 28 100.0 32 ............................ TGGCCGCAGGCGAGCAGGTCAGCCGGGGCCAT 15972 28 100.0 32 ............................ CCCAGACTCTCAATCATCACGTCATTGCGCGC 15912 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //