Array 1 6372-4083 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELL01000416.1 Thermus scotoductus strain 39_S39 NODE_92_length_8041_cov_53.6387_ID_183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6371 29 100.0 32 ............................. AGGGTCTTCTCCTGGGCAAAGGGGTAACTCTC 6310 29 100.0 32 ............................. CCGAAGGCGGAGGCGACCGTACCAGGAGCGCC 6249 29 96.6 32 ............................T CCTCGCCTTCTTCTCCTCCTTCCGGGCCGCCC 6188 29 100.0 32 ............................. TTCGTGGCGTTTATGGCGAGGTCGCCCTTCCA 6127 29 100.0 32 ............................. CTGACCCACGCCCACCTGGACCCCTTCGCCCA 6066 29 100.0 32 ............................. TGGTGGGCCTCGTCAAGCAGCAGAAGGGTGTC 6005 29 100.0 32 ............................. TCCGCGATCCAGGACTCGCCGATCTCCGCGGC 5944 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 5883 29 100.0 32 ............................. CGGCGAGCCCAGCCCCGGAGAAGAGCCTGGGC 5822 29 100.0 32 ............................. GGGACGGGCTCCTCAGGCTCGAGCCTCGGGTC 5761 29 100.0 32 ............................. GCGGGGCGCTCCAGGAAGGGGACGGGCTCCTC 5700 29 100.0 32 ............................. GCGGGGCGCTCCAGGAAGGGGACGGGCTCCTC 5639 29 100.0 32 ............................. AGGCGAGGGAAAGCCTGGAGGAAGCGGCGGAA 5578 29 100.0 32 ............................. CCGTGTGGGAGGCCCAGCGCCTCGCTAAGGAC 5517 29 100.0 32 ............................. ACGGCTCGGGTCCAGCTCTCTCTCCGGGCCGT 5456 29 100.0 31 ............................. TGGCCCCGTCCTGGACCGAGCCCTGGGCGTT 5396 29 100.0 32 ............................. GCGGTCCTGGACGCCCTGGTGCATGGGGGCGT 5335 29 100.0 32 ............................. GCCCGCCCAGGCGTAGCCGTAGAGGGTGGCAT 5274 29 100.0 33 ............................. TGCTAGCAGTCCCTACCGCCATGACCTCAGGCT 5212 29 100.0 32 ............................. GCCATTTATGCCCAGAACTCACCTGGGGGCAT 5151 29 100.0 32 ............................. CTCACCGTCTCGGCGCGCCGCCTCCGGGCCGC 5090 29 100.0 33 ............................. GGGAAGCCCCCGGGACCGGTTCCAAGCGTCATA 5028 29 100.0 32 ............................. GGGCGGAGCCGGGAGAGGTCCAGCTGGGGCAC 4967 29 100.0 32 ............................. CCCGTGCCGTGGCCCAGTCGCATCCGAGGCGC 4906 29 96.6 32 ............................A TTGTTCTGTTTTACGCTGAGATGGCGGAACGC 4845 29 100.0 33 ............................. CTGGCCTGGGGGGAGGAGACGGGGGAGAACTAC 4783 29 100.0 33 ............................. TAGTAGGCGGATCGGTCTAGGAAGAAGCCGCTA 4721 29 100.0 32 ............................. GCCGTGGCCCAGCCCTCGGGTAAGGTCCTCCC 4660 29 100.0 32 ............................. GCAGAGGCGACTTCCGGACCCTCTTCCCAGGA 4599 29 100.0 32 ............................. GGGTAAAGCTATTGGCCTAGGTCCCAATAACC 4538 29 100.0 32 ............................. CCGGAGGGCCTTGGCTAGGGCGTGGGCATCGG 4477 29 100.0 32 ............................. GGTGGAGTTCACCGCTGGACCCTGGCCTGGGT 4416 29 100.0 32 ............................. GCCCGGGCCCAGGCCCTGTCCAGGGCCCGGTA 4355 29 96.6 32 ............................T CCAGCTCCCCTGGCCCCCCACTACCGGGAATC 4294 29 100.0 32 ............................. TGGAGCCCTACCCGCATCGCCATTGAGGCCGT 4233 29 100.0 32 ............................. ACCACGTCGTCCACGAGGCGGCGAAAAGCGGC 4172 29 100.0 32 ............................. AGGACGGCAAGAGGACGGAAGGAGGACGGCAT 4111 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.7 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : CCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGTATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1574-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELL01000255.1 Thermus scotoductus strain 39_S39 NODE_32_length_16642_cov_65.1919_ID_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1573 29 100.0 32 ............................. GGCGTTGCCGATGCTGAACATAGCTCCTCCTT 1512 29 100.0 32 ............................. CTCCCGGGCCAGGGCCACGATGGCCTCGTCAT 1451 29 100.0 5 ............................. CTGAA Deletion [1418] 1417 29 100.0 32 ............................. TCCTTTTTCCTCAGCGGGCATGGTTCACCTCC 1356 29 100.0 32 ............................. AGCGCCATCGCCCTGCAGATCGCCAGCGCGGT 1295 29 100.0 31 ............................. CATCCCCATCCCCCTCCCTGTGCGCTTCGGG 1235 29 100.0 31 ............................. CTCCAGCCTGGTCCTGGGGTCGTTCAGGTCC 1175 29 100.0 32 ............................. TGGACGCCGGAGCTTGATCAGTTGCGTCTGCA 1114 29 100.0 32 ............................. AACACGGGGACTACACCGACCACGGGGACCAC 1053 29 100.0 32 ............................. GGACCCCGAGCTTGTCCAGGAGCGTACGGATC 992 29 100.0 33 ............................. GAGGAGGTGCCCGCTTACTCCCAGGCGGTCAAG 930 29 100.0 32 ............................. GTTTCTCCAGTTTCGGCCAACCAGTTGGTCAT 869 29 100.0 32 ............................. GCCTCCCAGTCCCATTCACCCACGGCCCCGGC 808 29 100.0 33 ............................. GGTCTGCCAACATCCGGCTCGCGCTCCCCGGCC 746 29 100.0 32 ............................. CCGGGCGCGCGAGGAGGCGAACGTGGACCTGA 685 29 96.6 31 ............................T CTGGTAGGCGAAAGCGGGACCGGGAAGACCC 625 29 96.6 32 ............................T TACCTGACCGACTCCGGCGGGGACACCCTCAC 564 29 100.0 32 ............................. CAACCTCCGGACCCTCTTCCCAGGAGCCCGGC 503 29 100.0 32 ............................. AGGAGACCCTCCGTGGATGGGGGGACGCCACC 442 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 381 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.9 31 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTACGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGCCGACATTCCGCACCCCTCTCCCTTGGCCTTAGGATTTTGGGATGGAAACCACACCCAACCTACAGGTGTACGACCTGGGCCACCTGGGTCTGGTGGCCAGCATCGTGGATCAGATAGGACTGGTACAGACCGTAGACCAGTTCGTGGGCCCAAGGCCGGGCGAAAAGGTCTCCACTGGCATGGCCCTCAAGGCCGCCATACTGAACGCCCTGGGCTTCGTCACCTCTCCCCTCTACCTCTTCGGCCACTTCTTCCAGGGCAAGCCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11722-13098 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELL01000255.1 Thermus scotoductus strain 39_S39 NODE_32_length_16642_cov_65.1919_ID_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11722 29 96.6 33 ...................A......... GAGGCCACCGTGCTCATACCGTGGCCGCTCCTC 11784 29 100.0 32 ............................. GCGCTGGGCTGAGCTTCTCCCACCGTTCCCCC 11845 29 96.6 32 ............................A GGGGCCACAAGCCCTTGTCCTTGGAAGAGGCC 11906 29 96.6 33 ............................T TCGGCAGCTGAGAGGCTGAGGGTGGGGTGAACC 11968 29 100.0 32 ............................. AGCATCCGCACCGCCGCCGCGAGGACGGGCCC 12029 29 96.6 33 ............................A TAACGGGTGCCGTGGTGTGGGTTCCCCCCGGCA 12091 29 100.0 33 ............................. GGGATCTAAAGGCCGATTGCGGATAGCCTCAGC 12153 29 100.0 32 ............................. CTCTTGCCCGTAGCTATCTGGTGCCGCTCCGA 12214 29 100.0 32 ............................. TGAGCCCACCGGGGCCAGGAGCCCCGTGGCAA 12275 29 100.0 32 ............................. GTGGATGGGTTGCTGCGGGTGGAGGGGGAAGA 12336 29 100.0 32 ............................. TGGCCATCTGGCCTGTGGCCCGGGAGTGGGCC 12397 29 96.6 33 ............................A GTATCGCTGGCGCAATTCAGGGGCTCGTTGTCC 12459 29 100.0 31 ............................. CTCACGGCCATGACCCACAGAGAAGCACGGA 12519 29 100.0 33 ............................. GGCGATGCGCTCACGCACCTCCGGCGGGGCGTC 12581 29 96.6 33 ............................A GAGAGCCACAGCCAGGGAACGGATGGGCTCACG 12643 29 100.0 32 ............................. AGAGCAGGGTCGGGTCCGGCAGTTCCATAGCC 12704 29 100.0 32 ............................. CGGATACACGAGAGGCTGGACCAGCATCAGGA 12765 29 96.6 32 ............................T CCCCCCGGATGGGGAGCCCCGGCCCAATCTCC 12826 29 100.0 32 ............................. ATGGGCGGTAGGCAGACCTTCCGCGTCCTCAT 12887 29 100.0 32 ............................. TCGCCGAAGATGGTGAGGATGCCCTTGGGGAC 12948 29 100.0 32 ............................. TACCCCTCGAGGCCCACGCTGACCCCCGGGGC 13009 29 100.0 32 ............................. AGGCCCGCACCTCGGGGTCCTCCCGCAGAAGC 13070 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //