Array 1 25-1974 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEX01000010.1 Ligilactobacillus salivarius strain AH4331 AH4331_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 .................................... TGCAGATGACATCATATTATACGTGAATGA 91 36 100.0 30 .................................... TAGATGAATGGTTAGCATTGCATAAAGAAA 157 36 100.0 30 .................................... ATGGCTACTTGCCAACTGGCGTAAGCGTAA 223 36 100.0 30 .................................... TGGCACTTCAATCACAAAAACAGTAAACAA 289 36 100.0 30 .................................... ATGATAATTTAACGATTGATAGCCCTACTA 355 36 100.0 30 .................................... GTATATTGGAAAGCATGTAAAAACACGTCA 421 36 100.0 30 .................................... AGTTAACGGCGAAAGCTCAACAACGACCGG 487 36 100.0 30 .................................... TGCTTATATTGTGTTTCCTGATTACAAGGA 553 36 100.0 30 .................................... ATAACGATTTTAATTACATCTGGTTGCTTT 619 36 100.0 30 .................................... TCCATCAATTCCATTGTTTTCTTCCTCCTC 685 36 100.0 30 .................................... AGGAGGAAACAGAATGGAGACAATAAAAAA 751 36 100.0 30 .................................... TCATAGCTAGGAACATAATGCTTAATTGCT 817 36 100.0 30 .................................... CGTATGTGATAGTAGATCCGTAGCCTTGCG 883 36 100.0 30 .................................... CAAGCAAACCTTTATAAGACTAGTGTTTGA 949 36 100.0 30 .................................... AACATTTCATTGTTGGGTCAATGTTTGGCT 1015 36 100.0 30 .................................... ATTTTCGTTGCTGTTTCCAACACTACCTCC 1081 36 100.0 30 .................................... GGATTGTTATACATGATTGACCCTTACAGG 1147 36 100.0 30 .................................... ATCAACAGTTACTTTGTCAGTGTCAATGAA 1213 36 100.0 30 .................................... AGAATTGAGTTTTAGCATAAGGCGTTGTAT 1279 36 100.0 30 .................................... ATACGTATATCGGATACTTTATGGGAACAC 1345 36 100.0 30 .................................... ATTCAATTAATGCGACTGATATGTTTAAAG 1411 36 97.2 30 ......T............................. CATCACTTTCTTTTCCACTTAGAACTTCAA 1477 36 100.0 30 .................................... CGTCTGTCCATTGCTTGCCTCCTGTTTACG 1543 36 100.0 30 .................................... AGACAAACTTTTAGAATTAATAACGAGTGT 1609 36 100.0 30 .................................... TAACTAGTTGATTTAAAAACAACTCTACTT 1675 36 100.0 30 .................................... TTCAGAAATATCATCAGTGTTGTTACGTAA 1741 36 100.0 30 .................................... AACAATCCGTATAAATTGTGTGATTTCTTG 1807 36 100.0 30 .................................... AGGATAAAAAATAAATTAAGAATTAAAGGG 1873 36 97.2 30 ...................................C TCTTCGTTCAACCGCTTAATTGATTGGTTT 1939 36 75.0 0 ......T...A.........T...AG...CG..G.C | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.0 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : GTTAACAATGTACGTCACTGGCGAG # Right flank : CTGAAAAACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAACATAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATACGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGACTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAACTAGAGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2118-4067 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEX01000009.1 Ligilactobacillus salivarius strain AH4331 AH4331_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2118 36 100.0 30 .................................... GTACGCTAACTCAGTTGTATTACGATAAAA 2184 36 100.0 30 .................................... TATAACTGCCTAAGATGTAGTAGAAGTCTT 2250 36 100.0 30 .................................... TATACAAATACGTTAAAGCTAACGTGATAC 2316 36 100.0 30 .................................... TGTACTAGCAACAGCACATCAGATTGATAA 2382 36 100.0 30 .................................... TAACCAAGATATATTAAGCAATTCAACAAG 2448 36 100.0 30 .................................... GAAGTCGTTTGACGCCAAGTTAAAGCTTGA 2514 36 100.0 30 .................................... TTGCCACTTCGATAAGCGGCACTAGCAATC 2580 36 100.0 30 .................................... CAACGGGCGGTCAACGAACAGCACCCAACG 2646 36 100.0 30 .................................... GAAATTCAAGGCTACAATGAAGACTAAGAA 2712 36 100.0 30 .................................... CAATTCTTCCAGCTTTCCATTAGTTTCAAC 2778 36 100.0 30 .................................... GAAGTTGCTATATCAATCAATTAAAGAAGA 2844 36 100.0 30 .................................... TACCGTGGGACAAGCAAAAGAAAGATATTT 2910 36 100.0 30 .................................... GAAAGCATCATACTTGACTACTGAGCCTTT 2976 36 100.0 30 .................................... TCAAAAAAATTGAGTCCAAAGATAATTAAT 3042 36 100.0 30 .................................... TATTATATAAGGCTTTTCAAGGTGTTATGT 3108 36 100.0 30 .................................... TAAAAATATTGAATATGTAGGGTTTACTTA 3174 36 100.0 30 .................................... TGATACTTGGAATAATGCAATTATATATCC 3240 36 100.0 30 .................................... CTCAAACATTGCTTATTATGTATCTGATGC 3306 36 100.0 30 .................................... AGTGTAGATGTTAATACAATGTTATGCTTA 3372 36 100.0 30 .................................... TGGTTTATATGGTTCTATGTTGTTTACCAT 3438 36 100.0 30 .................................... AAATTCAGCTAAGATCGGCGCTTTGCCTAA 3504 36 100.0 30 .................................... TAACTTCTTGGCAATCTTGTCAGCATCCAC 3570 36 100.0 30 .................................... AAACAGTGCCACCAACTTGTCCAACTTGTG 3636 36 100.0 30 .................................... TCTAGTTGTTTTATCTTTAAATGGTTCTAG 3702 36 97.2 30 .................G.................. CGTTGTTTCTAGCGAAGATGAAACAGGCAA 3768 36 100.0 30 .................................... GGATTGTTATATACGATTGATCCCTATAGG 3834 36 100.0 30 .................................... CGAAAAAATCCTTGAGCAAGTAACTACTCA 3900 36 100.0 30 .................................... AAAATGCAAATATTAAAGATGGTTATAGCT 3966 36 100.0 30 .................................... GCAAGCATGCAGATATTGCACATTATCATG 4032 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.9 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTAACGAGATTATTCAAGTATTGTCAAGTACATACAGAGACGTTGCTATGGAAAAATGCATATGATAGAATATCCTCAGATGTTAAATTACATGTGGAACTAAATAGAAAACGAATTATAGGTCTAACCAATGTCGTACATTATCTTACCAAAGAAGAGTTTCAGGAACTTGTAAGTCTTGTTAAAGCGACTAACTTATTAGTATTTATAATTGAATTCACAGAAAAGGATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGCACTAATGAATCGTTAAATTTTGATTATAAAATAACT # Right flank : AATCTCGTTAACAATGTACGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 79742-81630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEX01000036.1 Ligilactobacillus salivarius strain AH4331 AH4331_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 79742 36 100.0 33 .................................... TTTAATCTCAGTTAATTTGTTTAATAATTTTCC 79811 36 100.0 38 .................................... TAATTGTTCAGCTGCTTGTTGTAACAAATCAGCTAAGC 79885 36 100.0 37 .................................... CAAAACTAGCACTTGTAACAAATCCACTTTGAATATC 79958 36 100.0 33 .................................... TTCAACAAGGCATCAAAAAGCTTGTTTAAAAAA 80027 36 100.0 43 .................................... TTAAAATATATGGATAAAGTGTTTCATTACGTCCATCTCCTGA 80106 36 97.2 40 ...........G........................ TGATTTTGTTGGGATGAAAAATGGTAGTTTGCCACCTTCA 80182 36 100.0 42 .................................... TTAGCGACTTTATCATTTATGATCTTTTTAAATATTTCTTTT 80260 36 100.0 34 .................................... ATATTCTAAGAATAGATCATTCATTTTATCTTCA 80330 36 100.0 39 .................................... TCAGCAAGGCGAAGCCTCGCATTGTTTAGAGTATCCACC 80405 36 100.0 38 .................................... ACATACTGCTGCTGATAAAACTATACTTTTTTTCATTT 80479 36 97.2 34 ..............................A..... TTCAACTTGAATTGAAGCATATTTTAATAATTTA 80549 36 100.0 35 .................................... TCACGATAGCCTAGTACCAGAGCTACTCCTTTCAT 80620 36 100.0 34 .................................... AGGTTTCAACTTCAAAGGTTGCAAAATCATCATC 80690 36 100.0 40 .................................... CAATAACCCGCTGTTGTTAATGTAATCATTTTTCATCACC 80766 36 100.0 39 .................................... TTTTTCTTTTATTGTGAAATATAGGTCATCATATTTTTC 80841 36 100.0 37 .................................... ATTGATACTATGGTTCACTTGTCAACAGTTTACCAGG 80914 36 100.0 35 .................................... ACTAAATAACCTTTATTACTCGTATATTTTTATTT 80985 36 100.0 40 .................................... CTGAGTTAATTTTTGAACTAATTTTTTCTAAAACATCTCT 81061 36 100.0 42 .................................... TATATACATTTGACGGATCCATTTCTTCAGTTGAATTATTTG 81139 36 100.0 40 .................................... TCTTCGATAGTTATAACATAACCGTAGCCTTTTTCATTGA 81215 36 100.0 37 .................................... CAATCCCCACCTCCGAGGATTAGTTGCATAGAATTTA 81288 36 100.0 41 .................................... CTAAACCTCGCTTGCTTTCTCAGCTAACGAAAAAGGTATAG 81365 36 100.0 40 .................................... AAAAATATTAGGCTTAAATGTTCCAGTTTATTTCTACCTT 81441 36 100.0 41 .................................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 81518 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 81594 35 88.9 0 ............................-....TCT | TT [81624] ========== ====== ====== ====== ==================================== =========================================== ================== 26 36 99.2 38 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : ACAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTACTAAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAATCCTGTAATAAAAAAAGATGAGAGATTTATTTCCAATAGTGAAGTATTTATTTTCGATAAAATGTATGAAATATTAAATAATATAGTTTTAAAGTATTCTAGGGATGGTGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTCAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //