Array 1 541376-542955 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTRK01000002.1 Bifidobacterium breve isolate Bifido_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 541376 33 100.0 34 ................................. AAGGACATGGACGCCTCGTGGGAGTCGTGGCCTG 541443 33 100.0 35 ................................. GACGCGCATTCGCTGATCGGCATGTTGCAGAACAT 541511 33 100.0 33 ................................. CACCTCTACCGGTGGAGCATGAGCCAACGCAAC 541577 33 100.0 34 ................................. AAGTCCCTGGGCGAAGCCCGCCATGATGGCTTTG 541644 33 100.0 35 ................................. TCGTCACGCAGGGAGTATTCGACGGCCACCTCGCA 541712 33 100.0 35 ................................. GCCTGCCGGATGGCGTCGGCATCATCCACCGGACA 541780 33 100.0 32 ................................. CACGTCCGGTGGCTCTATCCATTCGCGCATCA 541845 33 97.0 35 ......................C.......... AGAACGAGGAAGTAGTGGCCACCGTCCTTGAAATG 541913 33 100.0 34 ................................. ACGAGCAGGCCGCCCACGTTGCCCAATGCGGAGA 541980 33 100.0 33 ................................. AAATCCCGAGACACGCCTGTGGATGCCCCCATT 542046 33 100.0 33 ................................. TCCATCGCCACGATGCCGGCCAGATCCACCACG 542112 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 542181 33 100.0 35 ................................. ATGTACATGAACCGAACGCAGCACCTCCGGCGCCC 542249 33 100.0 35 ................................. CAACAGTTTTGGGCCACTCCGGGAAGGAACAGCCG 542317 33 100.0 35 ................................. TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGA 542385 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 542451 33 100.0 35 ................................. CAGGCCGCACCGAACCTGCAATGCGATGCGTTGGA 542519 33 100.0 34 ................................. CGTGACGAAATCGGCCAGAACATCGCGAAGGGGT 542586 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 542654 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 542720 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 542787 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 542854 33 97.0 36 ....A............................ CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 542923 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 99.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTGCGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCGG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //