Array 1 2515-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGW01000451.1 Legionella pneumophila strain RH01 NODE_451_length_2519_cov_2.02132_ID_15215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2514 32 93.8 35 ........................TA...... TGAGAATCCTAAAGTACACAAATTAAAAGGCTCGT 2447 32 100.0 35 ................................ ATCCATGCGCCCTCTTTGGTAGTCGCTAATGCTGC 2380 32 100.0 34 ................................ GCCAAGCGGAAGTCGAACGTGACGAACCGCAAGA 2314 32 100.0 34 ................................ TGTTTTTTTATTGTAAACGTGAGTTATATTAGTG 2248 32 100.0 34 ................................ CGTTTATTTCGTCTAATTCTTCTTTGTTGAACCC 2182 32 100.0 35 ................................ GCAACTAATTCATAGAATGCAGTACCAAAATAACT 2115 32 100.0 35 ................................ TCTATGATGGCATCTTTGATAGCCATACTCAAGAG 2048 32 100.0 34 ................................ TGCTGTGTATAGGAGAGAACCTACACTCATAATT 1982 32 100.0 34 ................................ TTTTATTTTGAGTGTCTGGTAGGTATATTGGTAT 1916 32 100.0 34 ................................ TGCTGTGTATAGGAGAGAACCTACACTCATAATT 1850 32 100.0 33 ................................ TCATTTACATTTCTTATTTTTTGTTTAACTTGT 1785 32 100.0 35 ................................ AACAAAGCCCTATAAATCTTGATACACACTTAGGA 1718 32 100.0 36 ................................ TTATTAAAACATACAGTAATGAAGGCGATACAGTGT 1650 32 100.0 36 ................................ ATTATTTTAAGGGTGCAAGACTTAGGAGGTGTGGTA 1582 32 100.0 34 ................................ GGGCTATATACGTCCTGTTAAACACCTACCGCAC 1516 32 100.0 34 ................................ ATGCTATAACGTATGATAAAATAAAAGACGAAAT 1450 32 100.0 35 ................................ TAGCCGCTAATGCCTTAATTCCAGCGCCGTATTGC 1383 32 100.0 35 ................................ ATGATGATATGAGTAGGGTTAAGGGTTTGGTCGAT 1316 32 100.0 36 ................................ AATTTTGACATTGATTTATGTGCTACTAAAGAAAAT 1248 32 100.0 34 ................................ TCAAAAGACCGAAATACCATCTCGAATGAGATTT 1182 32 100.0 35 ................................ AATAAATTAAAAAAGCTTACAGGCGGTGTTGGCAC 1115 32 100.0 35 ................................ CGGTGTGATCGCCGTCAACCGCTCCCGCCGAGGTT 1048 32 100.0 36 ................................ CAGTAAAATGCAATAAATATTGTATTTATTTTACAC 980 32 100.0 35 ................................ ATACAAACGGGATAGGTAATAATCAAGCTAATAGA 913 32 100.0 34 ................................ GCTAATATCAATTGTATGTTCTTCTTTTAGACCT 847 32 100.0 34 ................................ AAATCTAATTGGGTAGTTTCGCGCAACGGGCCGT 781 32 100.0 34 ................................ AAATTACTACAAACCAGAATACTAGTAAAAGGTT 715 32 100.0 34 ................................ TGCAAGTCCTGCTATCAATTGATCGTCTGTTAAT 649 32 100.0 34 ................................ CATCCGTTCATATCTTCGGAAGCAATAACCCAAA 583 32 100.0 36 ................................ AATCGCCTCCATGCCGTATTTTCTGGCCTGTTCCGG 515 32 100.0 36 ................................ GTTAATATGAAAGGCCGAATAATTCATCGGCACGCC 447 32 100.0 35 ................................ GGGATTAGTTATCCTGCTATTCGAGACATTTTTTA 380 32 100.0 35 ................................ CATCACGAATGACTTGCTCTACTTGATTGCCTTTT 313 32 100.0 35 ................................ ATTTCATAGTTCCTTAATCTGTAAAAAGCTCGCCA 246 32 100.0 34 ................................ CCTCCTCATCTGCTTTTTGAGTTCTTAAATCCAT 180 32 100.0 35 ................................ CATCACATTGACCCAACACAAAAAGAATTCGCAAT 113 32 100.0 35 ................................ ATCAAATCATAACCTTGTTTTATGCAATATTCCTT 46 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AAAT # Right flank : CAATCTTAAGAGGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8168-5462 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGW01000112.1 Legionella pneumophila strain RH01 NODE_112_length_8209_cov_2.82207_ID_15213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 8167 32 100.0 34 ................................ TGAACGCAAAATGATGGCAAGAGAAATCGAAGAC 8101 32 100.0 34 ................................ AAATTTAGTTACAAGACTCGATATGATGAGGGAT 8035 32 100.0 36 ................................ GACTATTGTTTGTCATCATCCGGCTCGCCGCAAAAA 7967 32 100.0 34 ................................ ACATTAAACGCCTTCGCAAAGAATTGGCCGAAAG 7901 32 100.0 35 ................................ GAACTTACGAATCTTTGAACTGGAAATGCCAACGC 7834 32 100.0 34 ................................ AATGACAGTATGGGATGTGAAATCGGTTATCAAT 7768 32 100.0 36 ................................ ACGAGGACGTTTACTTTAGCTTGCTGGTTATGACAG 7700 32 100.0 36 ................................ TTTTGCGAGAAAAATTTAATAAATGCCAGTTGACAC 7632 32 100.0 35 ................................ AATAAAATAAAATCTTTCTGCTCATCACTAAGCCT 7565 32 100.0 34 ................................ CTGCCGTAACTCTTAACAGCAATATCTCTCAAAG 7499 32 100.0 35 ................................ ATTTTAATCCTTGGTACTAAGTAAGGGGATTTAAA 7432 32 100.0 34 ................................ TAATAATCAATTCCTTTTTGATTAATAAAATTAG 7366 32 100.0 33 ................................ TGCCAGACCGTTAAGCTGCCAATAAACTCCTAG 7301 32 100.0 35 ................................ TGTAGTTGGGCTATCTTCTGCGACTAAAGTCCAAA 7234 32 100.0 36 ................................ ACGGATGCTGAGGAAAAATACAAATTGTTTTCGCAA 7166 32 100.0 35 ................................ CGTTGATATTATCAAAGGGTAAGTTTGCAAGGATG 7099 32 100.0 35 ................................ TCCAAAGTCTTTGACTTTCATAGGTCCGGCTTGGA 7032 32 100.0 35 ................................ AGATAAAACTTATCAAAATTGGCGCAAGAAATACC 6965 32 100.0 35 ................................ TATCTACTATTTGCGACCATTCAGCAACACTAATT 6898 32 100.0 35 ................................ CACAAGCACAAATTAAATCTATCTTGTTGCAAAAT 6831 32 100.0 36 ................................ TTTTCTGTATCTGCTATATATTCCTCGGCGACTGCG 6763 32 100.0 34 ................................ CAAGCTTTATAGCCGTAGAGACAAGATACTTCAA 6697 32 100.0 36 ................................ AATCCTAATGACAATGAAGTCTTTATTCCAGATTTA 6629 32 100.0 34 ................................ ATACCGACACATTCATAACATTTTGCAGTGATTG 6563 32 100.0 35 ................................ CTCGACAATGTCGCTGGGAATTACTCGAATAATAC 6496 32 100.0 35 ................................ TTATTTGTTCAAACACTTCATCGTTTTGTTCCTCA 6429 32 100.0 35 ................................ AACTAAAGACCCAGCAGGAAAAACCTGTGCTGTTG 6362 32 100.0 34 ................................ AACACAGAGAATAGAACAGAAATCGACATGGATA 6296 32 100.0 37 ................................ GTCCCCGGGTCTACTACATTTTGTTGATATGTTTCTA 6227 32 96.9 38 .......................A........ TGCTTCCTGCAACGGTTGCAGACAAGCGAACATAACGC 6157 32 100.0 34 ................................ AGATGTTCGTCCGCCGCTAGGCAAGGCTCAATCG 6091 32 100.0 35 ................................ GTTTTAACCGTGGTTGATATTAAGTGCGTCTTTGA 6024 32 100.0 35 ................................ AATTGAATTAGAGCCGAATCCTACAGGGAATCCTG 5957 32 100.0 34 ................................ ATAATATCTAAAGCTTTACTAAAACCTTCGGCAA 5891 32 100.0 34 ................................ ATTACAATCTTACAAGGCTAGTGTTCGCAGGGCG 5825 32 100.0 34 ................................ ATATTGTTGTTACAGAGGGTGAATTCGATGCAGC 5759 32 100.0 34 ................................ ACATGAACAACCCTACTATTCCCACTAACCTAAC 5693 32 100.0 35 ................................ TAACCCAAAACCATTCATTGAGAAAGCTTGGGAAG 5626 32 100.0 35 ................................ TTTATGTATGGGGCGATATTATCTTAAGTAATGGT 5559 32 100.0 34 ................................ CAAATACACTTCTTTAATTCTTCTGTGCGTCCTG 5493 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ====================================== ================== 41 32 99.7 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : TTGCAACAATCTTAAGAGGGCATTCGCCTGAGCACGGAATG # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1612-2106 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFGW01000497.1 Legionella pneumophila strain RH01 NODE_497_length_2106_cov_2.52148_ID_16031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1612 32 100.0 34 ................................ AGAGATGACAAGATATTGTCCGCAACAGCTACAT 1678 32 100.0 34 ................................ ATTAAAAAATGGTGAGTTTGAGGATTTAAAAGAT 1744 32 100.0 35 ................................ TTTCATGATCATTCCCTGATTCTAACCATTCTCCA 1811 32 100.0 35 ................................ TGCATTAATAGCTTCTGCTGGGTTCCACCCACTAT 1878 32 100.0 34 ................................ ATTACATAAATTATCACGAGTATCAGGCGATACA 1944 32 100.0 34 ................................ TATCAATATTAAGCATCTTGGCATTCTTCAAATC 2010 32 100.0 35 ................................ TGAGAATCCTAAATTACAAAAATTAAAAGGCTCGT 2077 30 93.8 0 ..............................-- | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.2 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : | # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //