Array 1 52388-51581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHNB010000183.1 Serratia marcescens strain B2 Contig_183_36.7095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52387 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 52327 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 52267 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 52207 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 52147 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 52087 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 52027 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 51967 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 51907 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 51846 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 51787 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 51727 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 51667 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 51607 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 62160-60869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHNB010000183.1 Serratia marcescens strain B2 Contig_183_36.7095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62159 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 62099 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 62039 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 61979 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 61919 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 61859 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 61799 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 61739 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 61679 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 61619 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 61559 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 61499 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 61439 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 61379 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 61319 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 61259 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 61199 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 61139 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 61079 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 61019 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 60959 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 60899 28 96.4 0 ....................A....... | G,A,A [60872,60876,60878] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //