Array 1 4384267-4379740 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024615.1 Shewanella algae strain TUM17383 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4384266 28 100.0 32 ............................ TGTCTGATTAAACCAGCGTTCTGGCGCACTGT 4384206 28 100.0 32 ............................ TCAAATCCACGGCCGTTATGGCTGTCGAGGGT 4384146 28 100.0 32 ............................ TCGCGGCGGGCTAATCCAACAGATGAGCAACG 4384086 28 100.0 32 ............................ TTCATCGAGATAGTTCTCCAGTACGTACCTGA 4384026 28 100.0 32 ............................ GATGCCGCGTGGGAGATGCAGTAATGGGCAAA 4383966 28 100.0 32 ............................ ATTATAGGCAACTGTGCTGAATACGTTATCGG 4383906 28 100.0 32 ............................ ACCAAGGACGACATGCGCCAGATGATTGAAAG 4383846 28 100.0 32 ............................ ATTTGAACCCCCACTTGTCCGGGGTGACGGGT 4383786 28 100.0 32 ............................ CCTGATAAAATTCGCTTATCATTCATGCCTCC 4383726 28 100.0 32 ............................ ACGCCGTGAGGCGTCACGCTCCCAAGGGGATT 4383666 28 100.0 32 ............................ TTAGCTGTGCCCTCGGCATAACGGCCATACTC 4383606 28 100.0 32 ............................ TTTACCCATTTACGTGCCCCCACCTCATCCAA 4383546 28 100.0 32 ............................ TTCTGATACATCCGCTTTGCGTTGAGCAATAG 4383486 28 100.0 32 ............................ TGATGTCGATTGCTCGGCCACGCCAGACCATC 4383426 28 100.0 32 ............................ TAATTACCGTTATTTCGAAACCTATGCTGAAT 4383366 28 100.0 32 ............................ TGTTTGTAATGACGTCTATCTATTACGGCACA 4383306 28 100.0 32 ............................ CGGTCGGAGTCAGAATTCTGGAGGCGCGAATT 4383246 28 100.0 32 ............................ TATCAACGCGATTATCGTGTAGATAAGGGCCA 4383186 28 100.0 32 ............................ ATATTGAGCGAAGACCAAAAATCAGTTGTAGT 4383126 28 100.0 32 ............................ ATGCCAAAGGTAGACGCCATAGCCCCAACCAA 4383066 28 100.0 32 ............................ ATCGAGTTGGCCATCGAGGCCGATACCTGGGC 4383006 28 100.0 32 ............................ AAATGTGCGCGGACTACCAAGGCGAAGGCCGA 4382946 28 100.0 32 ............................ CCCTACCCTTAAGAGCGAGAATCTTGCTTGGC 4382886 28 100.0 32 ............................ CTGATGCCAGGCATGAATAAAGGGGGCTCTTT 4382826 28 100.0 32 ............................ GCTTGGGCTTTTGAGGCGGCCGTTTATTTAAA 4382766 28 100.0 32 ............................ GTAAGGCAAAACAGGCTGCCAATGCTAAGCCC 4382706 28 100.0 32 ............................ TGTATCGCTCAATGCTGGCGTTACCGAAGTGG 4382646 28 100.0 32 ............................ GCCGTGAGGCGCAACTTTCCCAAGGGGATAAC 4382586 28 100.0 32 ............................ TTGAGCAGGTATCCGCTGGCGGCTTGTGCGCT 4382526 28 100.0 32 ............................ AAGAGATATTGTTTGATCCGGACTAGACCTTT 4382466 28 100.0 32 ............................ ATTGTTATATACAGCCAGTGCGTAACTCATGT 4382406 28 100.0 32 ............................ AGGTTGGCTATGGCCATCAACTCGGCTTTTAC 4382346 28 100.0 32 ............................ AATAAAGAAAATGAAGAAATATTTGCTTAAAT 4382286 28 100.0 32 ............................ TTACGAACTGCCGGAGCTTTCAAATCAGTAGA 4382226 28 100.0 32 ............................ GAACGGTCGGAGACAAGAGGAATGTCCAGCCC 4382166 28 100.0 32 ............................ TGGTGAATATCAGCTTTGCCTCTCTAATTTCA 4382106 28 100.0 32 ............................ ATACCCAGGGATTTGATGACCACGATTCATCA 4382046 28 100.0 32 ............................ ATCAGGGTCATAATCTGCTGAGAACGCATCTA 4381986 28 100.0 32 ............................ CAGAAGAAAGGTTTCTAAGAGCATCAATAGTA 4381926 28 100.0 32 ............................ TTTTTTGTCGATATCCAGCAGGTCACTGAGTT 4381866 28 100.0 32 ............................ TACTGGCGCATCTATGACAAAGCCGCCGAGCA 4381806 28 100.0 31 ............................ CCGAATAGATTTTGGCTAACGATATAGCCGC 4381747 28 100.0 32 ............................ AACCTGGCAACCAGCGCGACCTTCTTCATCGG 4381687 28 100.0 32 ............................ ATCGGATTAAAACAGCGGTCAGCCTCACCATC 4381627 28 100.0 32 ............................ CGGCTGGAAGAGAGGGTGGTCGGCGCCAATGG 4381567 28 100.0 32 ............................ AGTCGGCGGCAATGATAAACGAGCTACAGAAT 4381507 28 100.0 32 ............................ CTATCGAACGGCGGCTATTACATGGCCCCTGC 4381447 28 100.0 32 ............................ TGTAATAGGCTACCCCGGTGCTGGAACATGAG 4381387 28 100.0 32 ............................ ATAGCCGCTCATCGTCGCTGCTACGCTGCAAG 4381327 28 100.0 32 ............................ AATTCGGAGAGTTTGTGGCATCTGTGGAGCCA 4381267 28 100.0 32 ............................ TAAGCGGGGCTTTTTTTGTTGTGGCCTGAGCC 4381207 28 100.0 32 ............................ ATCGGATTAAAACAGCGGTCAGCCTCACCATC 4381147 28 100.0 32 ............................ CGGCTGGAAGAGAGGGTGGTCGGCGCCAATGG 4381087 28 100.0 32 ............................ AGTCGGCGGCAATGATAAACGAGCTACAGAAT 4381027 28 100.0 32 ............................ CTATCGAACGGCGGCTATTACATGGCCCCTGC 4380967 28 100.0 32 ............................ TGTAATAGGCTACCCCGGTGCTGGAACATGAG 4380907 28 100.0 32 ............................ ATAGCCGCTCATCGTCGCTGCTACGCTGCAAG 4380847 28 100.0 32 ............................ AATTCGGAGAGTTTGTGGCATCTGTGGAGCCA 4380787 28 100.0 32 ............................ TAAGCGGGGCTTTTTTTGTTGTGGCCTGAGCC 4380727 28 100.0 32 ............................ GCGGGTCTATATCGGGATTTGGGCCACCATTC 4380667 28 100.0 32 ............................ CTGCAGAAGTGAAGCGTCAGCGCCGCCGAGAA 4380607 28 100.0 32 ............................ GACATCGGTTGGACTAAGGCGATTCAGATTGC 4380547 28 100.0 32 ............................ ATGTCTGAATGTCGAGATTCAAGCTCACACAG 4380487 28 100.0 32 ............................ TGCCGGAGCAGGCGCAAACCGTAATCGCCTCA 4380427 28 100.0 32 ............................ CGCGCAAAGAGGCCGAGGGCTGGGAAATGATG 4380367 28 100.0 32 ............................ AGTTATCTGAGGAAGGCACTTGATTATTTCGG 4380307 28 100.0 32 ............................ TTATGTGTCTGCCCAAAGCCTGCGTGAATACA 4380247 28 100.0 32 ............................ TAACTCTAATCAAATCCAACACTTCAAATCAC 4380187 28 100.0 32 ............................ TTGCCGCTGATTGATGCCGCCAACGCTGGCAC 4380127 28 92.9 32 ............T............T.. GTATCAGAGCGCGACATTCGGACGCTGGATCT 4380067 28 96.4 32 ............T............... ATTCCCAGAGATTTCATGTATTCTTCTGTAAA 4380007 28 96.4 32 ............T............... AAAGAAACAGACTACCCACTGAGTACAGAACG 4379947 28 96.4 32 ....C....................... TAAAAACCGATAACGCTGTGAAGCGTCATTTA 4379887 28 96.4 32 ....C....................... TCCACCGGCAAAGTTATCAACAATCAGTGGGC 4379827 28 96.4 32 ..........A................. AGGAACACTGCAGCAGAAACACCCCGGGCCCA 4379767 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 76 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGAATTACCCTTGAACCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAGGAGGCCGAAACTGAGGTGATCTAAATAGTGGCCCGGTTCAAGGCAGCATATCTACTCGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCATCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //