Array 1 104702-105505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTR01000001.1 Bifidobacterium tsurumiense DSM 17777 contig1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 104702 36 100.0 28 .................................... TGTCACCATTCTTGATGTTCGAGAACCT 104766 36 100.0 28 .................................... CTTGGAAACACTGATGAACGCCGTCAGG 104830 36 100.0 28 .................................... AACGAACAGGAATTCCTCGACGGGCACG 104894 36 100.0 28 .................................... AGCACTAATCAGAGCTTGGCCGGATGCC 104958 36 100.0 28 .................................... TGCGACAAAGGATATGCGGTGACCGAGG 105022 36 100.0 28 .................................... CAGAGACATCTTCGACATGCTCTACCGG 105086 36 100.0 28 .................................... AAAGTGCTGCAAGAGACAGCAGAAAAAA 105150 36 100.0 28 .................................... CATTTCCTCCTTGGACAGCTCTCCCAGC 105214 36 100.0 28 .................................... CATCAACGGCATCCAGCCCGTCGAAGCC 105278 36 100.0 28 .................................... AACGAGGATGACACATGCGAGGATGATT 105342 36 100.0 28 .................................... GATTTTGTGATTTCACGGATTCCAAAGC 105406 36 100.0 28 .................................... AGACTTCCACGCACGACGAAGCCACGTG 105470 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 13 36 100.0 28 GCTGTGAATTAGCTTTCTACCCTCTTGATAAGATTG # Left flank : CCAACGATGATCACGAATACGTAATCACTCGAATCGGAGTCAGACATTTCCGAAATTCCAACAAGTACCACGATAATTGTCAGTATTACGCCGACCCACGCCAATACTTTTGCTGTCGCAATATACCCAAAGCCATACCTTGAATCCACATTCCTAAGCATCGGTGGTTGAGTTTGCATTTTCTGATACTGTGGGTTCCCTTGATTTTGCGATGCTTGATTTATATTCTGTGACATGGCTTCCCTCCCTGCCTTTATATAGTCACATGCTCTTAAGGCTAGTGCCATCGAACCATTTCTCATAATATCTGTAGATAAGTCTCGAATATTGATCCATTTCAAATAGGAGTAAATACGACACCATCGTTCTGATTCCACGTTTTAGCTGATTCTCGTTTCCTGGAGTGATGTAAAGCGCACATCATCAGCTAACAAGAAGTAGCACCTATCATGTATTCGGCGTAATTGTTAAGATAGCTACAATGCAAGCCACCCGAACAG # Right flank : GATCAATCTCGCCAAGAGGGTAGATTTCAACGTTTTCAGGTTGTTTTGCGTTTAAAAAAGCAGCAAAGTGTCAGGTGTTTCATCTTCTAGTTGAGGCCTTAAATTTGCAAATCGGAGAGATTTTGACCATTGCTTATCGGTTATGTGCAAAATCCTCACTTTTCCATTAGGTGGAAGATTTTCTTTGACTTTCAAAACAGTCGTACGGTTCCCATCTGCCGTTGGTGAGTAACGGGCATACACGGAAAACTGAATCATGCAATATCCCATATCCTGGAGCAAATGCCTGAACACAGCAGCATCATGACGTTCTCGCTTGGTCAAAACAGGAAGATCGAACATAACAAGACACCACATTCCACCACTATCCTCGTCGATTTTCATGGTTAATCCTTGACATATTGTGGAATTTCAATTTTGTCTAGCTTTCGCTCCACATACAGTGCATACTGCTGGCTGAAATCATTGATTTTGCTCGGAATCGTTAATCCTTCGCCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGAATTAGCTTTCTACCCTCTTGATAAGATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 36393-36858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTR01000003.1 Bifidobacterium tsurumiense DSM 17777 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 36393 36 100.0 36 .................................... TGGGCGCTCAAAGCCCTCGACGAGGAGCAATGCGAG 36465 36 100.0 34 .................................... GTGATCGCGTCACCTGCGTGTTCCTGCCGGTCAC 36535 36 100.0 38 .................................... CTCTGCCTGACTGGATTGCCTTCGCGTTCATGCCGTGG 36609 36 100.0 36 .................................... ACGGCCCACTGGCCGGTGAACCGGTCGAATGCGGGG 36681 36 97.2 35 ............................A....... CCAACGAATACGGAGCAACACGAAAGGACATGACC 36752 36 94.4 35 ...............G............A....... AACCGATTCGGACGCGATGACGGACCGGTCGGAGT 36823 36 86.1 0 ..........C..AGT............A....... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 96.8 36 ATTGCCAGAGTTATAAGCTCTGGCCTTCGTTGAGGA # Left flank : TACTTGATTGCGTATGACATCGTCGATGACAACAGACGAAGTCATGTGGCAAAAGCATTGCAATCATATGGAGAGCGGTTGCAATACAGCGTATTTTTGCTTGAAGTCAGGCCGGCACAGATGATTCGAGTTCGCCAGCAATTGGAGTCTGAAATGGATCCGCAAGATAATTCGATTATTGTGTGTCCGCTCGGAAACAGCGCTCGTGCTGCTCAAGAGATTCAGTTTTTAGGAAGACATAGCTACGAGGATGTGGCTATTCCTACAGTGATTTAGCGCATAATGCGCTGGTTGTTTGATAATTCAAGAGTGGATTTTACATGGTTATGTGGTTGCGAGAGGTTCATCAGGTGGGAGATGGTGCCTCAAGCACTCGCGGTTGGAATTCTGCGGATTGTTGAGCGTGTTTGTGTTTGTGGGCCTTTGTGAATGGCGCTTTCGGAGAGCCGCTCGCGAAATAGGTGATTTATGCAGTCGCTCGAGTCCTTTATTATGGGTCT # Right flank : AGCGTTGAACGTCAATTGTCTTGATCCCATTTGGAAAATCTCCTGCATCGTGAACCAGCGATTGAGACGCAATTTAACTCAAAAATCGTTCATTCATGGCAGGATATAATCCATGCTTAGCATTCGCTGGTTTGCGGAATCGGCCACGTCGTTCCCACCTCGCCACTGCTATAGTCAAAGACCATGAAGCTCCTGCACACCGAAAGACTGACGCTCAGGCCGTGGCGCGAGGATGATGCGCCGACCTTGTTCGCTTTGGGGTCTGAGCCGAGCATTGGTCTCAATGCAGGGTGGTCTCCTATTCGGGATATTGAAAATGCTCGGGATGTCATTGAATCGGTATTGAGCAATGACTTCACATATGCAATGACCCTTCGTGAATCAGATGAACTTGTCGGGTGCATTGCGCTGAAACCAGTAGCCGAATCGGTGCTCTCTCTCGTCCATAAAGGTCAGATTGCGGGATTGGAAACCGATGAGTTGGACAACTTAGATCAAAC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCAGAGTTATAAGCTCTGGCCTTCGTTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //