Array 1 297769-296780 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 36618 SEET6618_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 297768 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 297707 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 297645 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 297584 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 297523 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 297462 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 297401 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 297340 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 297278 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 297175 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 297114 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 297053 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 296992 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 296931 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 296870 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 296809 29 96.6 0 A............................ | A [296782] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 315333-313901 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 36618 SEET6618_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 315332 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 315271 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 315210 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 315149 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 315088 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 315027 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 314966 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 314905 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 314844 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 314783 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 314722 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 314661 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 314600 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 314539 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 314478 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 314417 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 314356 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 314295 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 314234 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 314173 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 314111 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 314050 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 313989 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 313928 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //