Array 1 12638-11754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUZ010000007.1 Actinomadura formosensis isolate LMG 29178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12637 30 100.0 31 .............................. CCTGGGCGCTCGGGTCGGTGGCGATCGGGTC 12576 30 96.7 31 ............................A. CGTGCCCACGGTGCATTTGCTGTACCGAGAG 12515 30 96.7 31 .............................A TCCGTAACACCGCAGATCAGGCGGCTGTCGG 12454 30 96.7 31 .............................A GCAGACCGACGTGCGCCGACTGATCTAGCTG 12393 30 96.7 31 .............................A TGTCCGGGCAGGCGCGACAGAATATGGCCGC 12332 30 96.7 31 .............................T ACATGTGGATGCGGCCCGGCGGCCGGCCGCT 12271 30 100.0 31 .............................. AGTGGCCGGACGACATCCCGTCCGGCTGGCA 12210 30 96.7 31 .............................T CCAATGCCCAGCGGCGGCGCTTGGCGGAACG 12149 30 96.7 31 .............................T GGATCGGTATTACCGGAAAGATTTCCGGCGG 12088 30 100.0 31 .............................. CGATCCCGAACCCGTCGCGGTCCCTGCCGCA 12027 30 96.7 31 .............................G TCACCAAGCCCTGGCAGTGCGGCGAGGGTGG 11966 30 100.0 31 .............................. CGATCCCGAACCCGTCGCGGTCCCTGCCGCA 11905 30 96.7 31 .............................G TCACCAAGCCCTGGCAGTGCGGCGAGGGTGG 11844 30 96.7 31 .............................T GCGTGAGCCGCTCATCGGCCCGCACGTCCTG 11783 29 73.3 0 .........-..G......C.CC....GAT | T [11768] ========== ====== ====== ====== ============================== =============================== ================== 15 30 96.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATGTCACCCTGCAAAGCGACCACGGCATGAACATCGCATCCGGCCGCAACTACGCCGAAGACGTGTACTGGTGACCATCATCATCCTCACCAACTGCCCCGCCGGCCTGCGAGGCTTCCTCACCCGCTGGCTGATGGAGATCTCCCCCGGCGTCTTCATCGGTGGCCCATCAGCCCGCATCAGGCAGGCCCTCTGGGACGAAGTCCACCAGTACGCCGACACCGGCCGCGCGCTACTCGCATACAGCACCAACAACGAGCAGGGTTTCACCTTCGAAACCCACGACCACAAATGGCATCCCATCGACCACGAAGGCCTCACACTGATCCGCCGCCCCAAGGCCAGGCCGGCCGTCTCCTCCAAACCCCCACCAACCGGCTGGAGCAAAGCCTCCAAACGCCGCCGCTACGGCAAACGCTAACCCAATGCCCGAAATGTCGGAATCTCACAAAGTGCTCAAAAACAGGGATCCCCGCCGATAAACCTGCAGGTCAGTCAGA # Right flank : CCACGAGGCCGGATCCTCCATCACCGGCCCGATCACCGCGACGTCCGGAATGAACCTCTCCCGCGGAACCTGCGGCAGCAACTCCCGCCAGGCCGTGGCCTGTGATTCTTCGCCGCTCATGGATGCCTCTGCCAATGGAATCGCGCTAAGGGGAATCGTCAGCGTGCCGTCTTGAGGGGCAGCTGTTCGGCAGGGTCATGCAGTGCTGGCGCCGCCCGCGGGACTTGGTCGAGCAGGGCGGCGGCGATGTCGGATAGCCGCCGCAGACCCGCTGGGGCAGGCACTGAGGTCAGCCGTGCCATCAGATCGGCCAGGATCTGGATGGCCCTGGTGTCGTCGGCGATCGCGGACAGGGGCCGGGCCGCATCCAGCCGCTCCAGCAACTGCGTGGCGCTGTTCTCGTCATGGTCGAGCAGGCGCACGATCCCGTTGCCGTTCCACGCCCGCAGGCCGGCCGCGGGCGCCGGCCGTCTCCTCCCGCAACTGCTGAAGCTTCAGCA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22409-23109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUZ010000007.1 Actinomadura formosensis isolate LMG 29178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22409 30 96.7 31 .............................G AGTCGTCCACTTTGAACCACGTCATTGGCGG 22470 30 96.7 31 .............................A AGCGGGATGCCGTCCGCCACCAGCTGTGGGA 22531 30 100.0 31 .............................. AGGAGAACCCCGACTTCTTGCGGGGCTTGGG 22592 30 100.0 31 .............................. GGACCCACGCAATGCCCGCGATGGCGGCGAC 22653 30 93.3 31 ............................AT TTGGACCGTTCCAAAATCGTCCCGGAAACCG 22714 30 100.0 31 .............................. CATGCCTGAGACCCGCCCCTTCCACCTGGGC 22775 30 96.7 31 .............................G GCCGGACGCGCTGCTCCCCGGTCGTCTCGTC 22836 30 100.0 31 .............................. CATCATGTGATCGACTGAAAGCAACTGTCGA 22897 30 96.7 31 .............................G CGACGGTGGCGGCGTTGCCGGCGGTGGTGCA 22958 30 96.7 31 .............................A GGGCGTTCACATCGGCGGGGGGTCGGGGGCG 23019 30 93.3 31 ............................GA AGGCCGGCAAGGCCGCGAAGAAGGTAGGCGG 23080 30 90.0 0 ..............T............T.T | ========== ====== ====== ====== ============================== =============================== ================== 12 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GAGGGAGGGTATCGCCACCCCGAGGGACCAAGCACCGTCACCTCGCGGCCGAGTCATCCTCCTGATTCTCCGCCCCCTTCGCCGGCGAAGGGCGCTTGAACACCGACATGGCTCAGAGCATCGAAGCACCGCCAGCGGCGCCTCCGGCCAACAACGACTGAGGCGGATTCGTCTGCGCTCAGTACGTCAGAGCCACCGTAGCTGCGGCGGCGACCGCCGCGATGAGCAAGATGAGGAGCGTGTACAGATCAAGGGAGGACTGAGGAGTGTCCACCAGTACCACCTCCTTTCATCACTTCAGCTCGAACCCCTCAATGCGTTAGGACCTACAGACGGCACAAGAGTCTTGTCCCGCGATTCCAGAACATGCAGTACTGGAGTCGTGTCGCAGAGGTAATCTTCCGACCAGAACCAACCGATCGCCGAGTCCGAAAATGTCCGAATTCTCAGAAGTGCTCGAAAACGGGGCTCTCCCCGAACAAACCCGCAGGTCAGCCAGA # Right flank : TGAGATGCCGGGTCAGAAGGCGACTGTGGGGGGTGGTGGCTCCTCGGGGCGGGGCGGGACGCGTTCGATGGCGAGTTCCGCGGGGTAGCGGCGCCCGCTGCGGATGATCTCCAGGGTGGGGTGGATGCGGGCGCGGTCGCCGACTGAGAACGGACGGGTGCCGCCGCGCAGGTCGTGCCGGGTGCCGTCGCGGCGGATCAGGGTGGTGCCGTTGCGGCTCAGGTCCGTGATCGTCAACTGCGGGCCGTCGAGGTCGAAGCGCAGGTGGGCGCGGCTCACGCCGCGCCGGGTGGTCTCGTCCAGGAAGGGGGTCAGGTCCGCGGGGCCGGGGGAGCGGCCGGCCGTGACGGGGGTGCCCTCGGCCACCGGGAAGCGGTGCACCTCCCGGCCGTCCCGCATGATCTTGAGTTGGGCGATCCGCGGCCGCGGGCCGAGATCGGCCATCTCCAGCCCGTGCTGGTCGCATACCAGGTGGCCGCCCCGGACGCGCGGCAGCAGGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //