Array 1 2024-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000175.1 Mesotoga sp. HF07.pep.5.2.highcov contig174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2023 30 100.0 37 .............................. ATTGATAACAGTAAAGTTTCATGATTACTCTTACTTA 1956 30 100.0 37 .............................. AATGATAACTAATAAACCCCGCTATACCTGTCAACCG 1889 30 100.0 38 .............................. TCTATTGAAGTCTGGAAGCCGTCGGCTTCGTTCTTTAC 1821 30 100.0 36 .............................. GTCTGAGCCTTCATAAGCTCGATGTTCAGCTTAATC 1755 30 100.0 38 .............................. AATACAACGCAAGGCCCTTGAATTCCTGATCGTATCTT 1687 30 100.0 37 .............................. TCATACCCCCTCCTTCCTGTACAGGATTTTTTGCAGG 1620 30 100.0 35 .............................. AGATCCGGGGCGAGGAAGCTTCACTTGAAGCTTCC 1555 30 100.0 39 .............................. GGGAATGGAGGTGGAGATTGATAGATGGGGAAGCAGTTG 1486 30 100.0 35 .............................. ATGAAACTTTCGATAAAGTTCCCTATGTTTTGTGG 1421 30 100.0 35 .............................. TTTTCCAATCCATGTTCTATCCCTCCTCTCAAACC 1356 30 100.0 36 .............................. ATTATAGGCAATTACACGATTTGGTTTGCTACTTGA 1290 30 100.0 37 .............................. AGATTGCAACGTCCTCGGCACTGGAATCGAGGCCCTG 1223 30 100.0 38 .............................. TCGTGTTCCCTCCGACAATCGTTCCCGCCTTGACGATG 1155 30 100.0 37 .............................. CGAACGAGAATCTTCAGCTTTTCGGCCTCAAACTCTT 1088 30 100.0 34 .............................. AGACTAGGACCATTCGATCACTTCCTCATTCCCC 1024 30 100.0 37 .............................. ACAATAGTTATAACACAATAGCTAGTCTCTTCTACTA 957 30 100.0 37 .............................. CTTACGGTTACCAATACACAATCCTGATCATAAACTA 890 30 100.0 35 .............................. AACACGTCTAACATGCATGTAGTCTGGTTCGGTCT 825 30 100.0 34 .............................. ATGTCGATGCGATAACCCTTTCCTCTCTCACCGA 761 30 100.0 36 .............................. GCCCTTGATTCGCCACCGTCCTGGTGGGTGTTACTT 695 30 100.0 37 .............................. TCAGAAATCATCACATACTCTCCGTTCTCATCAACCA 628 30 100.0 35 .............................. AGCAATCATCCCCGTCGACGTGATCAACCATCCGG 563 30 100.0 37 .............................. TGCGGCGCCTTGTGATCGGGGGGGGGGTTATTACTTC 496 30 100.0 37 .............................. TTTCATGCGGGTTTCGGTCAACGGGTGTTGCGTGATG 429 30 100.0 38 .............................. GTGGGTTTGCCGCCGGGGGGCTTGGGGGCGTGCTCCTG 361 30 100.0 37 .............................. GTCACCGTCTTCATCAATTACCTTTAGAGTCATTTCT 294 30 100.0 37 .............................. GTCTTTTCGCCTACTTTTTCATCGGGCCGTAGTTCCT 227 30 100.0 35 .............................. TCCAACTCCCTGATCTTCTTCTGTTCTGGAGTTTC 162 30 96.7 38 .......A...................... CCAGTATGTCTGATACTGAAACTTGAGCCGTGAGAATG 94 30 96.7 0 .......A...................... | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.8 37 GTTGCGTGAGAACCATAGTGGTATGGAAAC # Left flank : CTTATTGTCGGATCGCATTACGTAAAATCGATTTTTATGAACCTCAAATTTAGGAGTATATTTATCCTATTTCATTGATCGCATTGAGTTGTCCTTGCATAGAGCTTTTTCCGAGTTAATAATTCCGTTACCAATCCTCGTCGGATCGATCGTATACCATCTTCCTATGAAATCATTTCCTAATAACACTTCTAGGCCTATTTAGAATGATTATTATACAGTTTACACAGATTCGACTGAGGATAGGTCATTTGATTGAAAGCGAAATCGGGAGCGCTTTTCTTCTGTAAGCTTCTGCTGGGGAGTGTCGCGCCGGTATTCTTCACGGTCGTTCTTCCTTAGAGGATACCGACGCCTTCTCCCTCCACATCACACTGCGTCCATCTAGAATCAAATCCAAGCGAATCGCCGAAATGTAAATTCGATGTCGCTTACGAGATCTTCCCAGTTGGTTGATTCTGCCTCCCCAAAACCTGTATAATATCTTTGTAATAAAAGCG # Right flank : CATTTCACCGCTGAAGAGCATGTAAGTTTCCACTGTGTTTGTTGCGTAAGAACCATAGTGGTATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTGAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1543-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000496.1 Mesotoga sp. HF07.pep.5.2.highcov contig281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================================================================================================================================================================== ================== 1542 30 83.3 37 C.CTT...T..................... TTACATCAAACGGTCTTGTGCTATCGGTTAGCCAAAC 1475 30 100.0 34 .............................. TTTGTAGATGATCGAGCCAGTTATCAATCGCTTC 1411 30 100.0 37 .............................. CTTTATATCCGTGGCGTTTCCTTGCCTTGTTATCCTC 1344 30 100.0 36 .............................. GCCGGCGGGGGGCGTCTCCTGGTTCGTGAAGATAAA 1278 30 100.0 38 .............................. TTGTTGAAGCTGTTCCAGTACTGCCGGATTAGTTCCCG 1210 30 100.0 36 .............................. GATAGTTTCAAGAGGTTGCTTCTTTCTTCTCACCAT 1144 30 100.0 39 .............................. TTGCAAGTATCCTTGAGGCTACCGTCCTCTTTGCTTTTT 1075 30 100.0 35 .............................. AGCATAAATGATATCGCTCGGGTCAGAGCTGACGA 1010 30 100.0 35 .............................. ACTGTGGAGTAGAGAGCTTTTCCGAGTCCTTGCAA 945 30 100.0 37 .............................. GTTGGTAAGTTACATGTGATCTTCTGGAGGATCTTGA 878 30 100.0 37 .............................. TGTATGAGCATAAAAAAAGAGAGAGAATTCAATCTCT 811 30 100.0 36 .............................. TTAGGCAAAGACACTTCAATCTCTCCATTGAAGATT 745 30 100.0 37 .............................. ATAAAATCTCTTGCGTATTCTTTGAATTCGCTTATAA 678 30 100.0 39 .............................. TCGGCTATCTCTTCTGGTTCGGCTGCATCCGACTGCACA 609 30 100.0 37 .............................. GCATAAATGATATCGGAGGGGTCGCTGCTGATAAATG 542 30 100.0 38 .............................. TCGAGAATGACGAGATCGAACTCCTGCTTCATCGCCCA 474 30 90.0 235 .........................CT..G AGCCGTTGTGGGTGGTTCGTGGTTGGTGGTTGGTCAGGAGCAAAAAACTAGAGCCTGACCTATCCTCAAGAAGCAAATTATAGCAATATGATCAGAACCAACTCAGTTTGTCATCCTGAAAAGCTCCTGTTCAGGATCTGGGCTCTGATCCTATCGGTGACGAGTCTTATGCCCGACGAAGTCGGAACTGGCCTTTGCGAAGCAAAGACTGGCCGCACGAAGTGCAACTGGCCAC 209 30 83.3 37 CGAAG......................... TTGATCTGCTCCGGAGTCATCTTTGCCACCTGTTCCC T,G [199,202] 140 30 100.0 38 .............................. TAGGTCATCTTCCGTGTGGAGATCTTCATTTCATCACC 72 29 90.0 0 .........................-..TT | ========== ====== ====== ====== ============================== =========================================================================================================================================================================================================================================== ================== 20 30 97.3 47 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : TCAAGGGGCATTATGTTAGGCTGTGAGAACCATCCATTTTGTCATCCTGAAATGCTCCTGTTCAGGATCTGATCTTAGATCCTTTCGGTGGACGGGTCCATGTTCTTGGACGGTCAACGGAGGACT # Right flank : TGCTGCCTTCGGCAGGACGCTGTGCCGGGAAGATCATCCCGGGA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1096-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000646.1 Mesotoga sp. HF07.pep.5.2.highcov contig338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1095 26 76.7 37 ----T..AT..................... GGTCTGTGCATTCATAGTCCTAGTAGAACCTTTGCAA 1032 30 100.0 38 .............................. AGGTCGGACAGAATACTGTCCATCTTTTTCAAAACCTT 963 30 100.0 37 .............................. ATTTCCATCAGTTCCTCTACTGTCACGCCCAGTACCC 896 30 100.0 34 .............................. ATACCACTGCTTGCGGAAGAATCTCTCCGTAACC 830 30 100.0 37 .............................. ATGAGAACATACATAGCAAAAGAGAAAGAGACAGTCA 763 30 100.0 38 .............................. AGCTTGAACGGTGTACCAATTAAATTGTTGCTCTTGTC 695 30 100.0 38 .............................. AATTCCAGCGAGTAAGCGGTAGCCTGTGTATCCTGGTT 627 30 100.0 40 .............................. AATAGTTCATATTCTGGTATTCCATGAAACCCAAACACTG 557 30 96.7 38 .......A...................... TTTTCTAGCTGAACCATGTAATAAATTCCTGCGGTGTA 489 30 100.0 35 .............................. GGTTGGCAAAAAAAATGGCGACCGCTTGGGTCGCC 424 30 96.7 38 .......A...................... AGGCCGACCACGACCCATATGTAGCTGACCACGGTTTT 356 29 86.7 0 .......A.................-..TT | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 96.4 37 GTTGCGTGAGAACCATAGTGGTATGGAAAC # Left flank : | # Right flank : TGCTGCCTTCGGCAGGACGCTGTGCCGGGAAGATCATCCCGGGAAGTGATGCGCCGAAGAACATCGGCGGACGCAATGCCCGGAAAAGCATCCGGGGACGCATGGCTGGCTTCGCCAGGAGGAAAGATCCTTCAAGGGGCATCATGTTAGGCTGTGAGAACCAACTATTTTGTCATCCTGAAAAGCTCCTGTTCAGGATCTGGTCTTTGATCCTTTCGAAGCACCGTTCTTATGCCCGACGAAGTCGGAACTGGCCTTTGCGAAGCAAAGACTGGCCGCACGAAGTGCGACTTGCCACAAAAGGTGAATGAACCATAGTGGTATGAAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTGAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3614-108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000247.1 Mesotoga sp. HF07.pep.5.2.highcov contig330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3613 30 100.0 38 .............................. TATAGGCTTATAGACTGGTATGGTCTTATGGCTTATGG 3545 30 100.0 37 .............................. AGTATTAGTTGGTTATTGGCGATATACCAGAATTCAG 3478 30 100.0 38 .............................. AGCTATGCCTAGGTCTGATAGCATGGTCTAATGGGTTT 3410 30 100.0 37 .............................. ATCACTACAATAAGCAACTAACATGCTATAACTCACT 3343 30 100.0 40 .............................. ACTTGAGATTGAAGTTGTTCCTTCTTCATCTCAAGGTCTG 3273 30 100.0 35 .............................. AGTAAGGGTAGAACTATTTGGCTATTGAGGGAGTG 3208 30 100.0 39 .............................. TTGCGGCCCAAGTGATCGGTGGGGGTTACTTCTTCGCTG 3139 30 100.0 37 .............................. ATAACCGTGATTCCAAGCCAATTACAGAGCTCATCAA 3072 30 100.0 37 .............................. TTGGTCGATCACTTCGGCGAGCAGTTGGGCGGCCCTC 3005 30 100.0 35 .............................. ATACGAGATCGCTGAAAGTACGGGGGGCGGAATCG 2940 30 100.0 37 .............................. ATAATACTCTTTCTAATTCTTTTTTCTCTCTCTTCGG 2873 30 100.0 37 .............................. ACTGAATGGATTCTAGTATATCTAATCTTCGAGTCTA 2806 30 100.0 39 .............................. ACAACCCATTTGCCAGCCTGTTGATCTTCCTGACGAAAC 2737 30 100.0 37 .............................. TTCCTAACAGCGTAGTCTCTTCTGCAAAGTCTAAGCC 2670 30 100.0 38 .............................. AATATTCCCACTGTATCTCTTTGACTTCATTTCTTCCT 2602 30 100.0 37 .............................. AGATTTCCAAGCCGTCATTATTACTTATTCCGTATCA 2535 30 100.0 36 .............................. AGAGTTCTTGCTGAGATGAGTAAGTTTAATGAGCTT 2469 30 100.0 36 .............................. TGATTGCATACTCGACTATCTTTTTCACACGCTCTT 2403 30 100.0 34 .............................. CCGCACCGTTGAACTTCTTGCCATAGACAAGCTG 2339 30 100.0 36 .............................. TTATTTACTTCACGATACTTAACGATTTTGTATAGT 2273 30 100.0 37 .............................. TCAACGGTCTCTTCGTCAACGGTCTATTGGTTCCATT 2206 30 100.0 37 .............................. TTGCAGTTGATTTCCACTCTGCGAAATTCACCATTGA 2139 30 100.0 36 .............................. TTGTAGTCATTTTCGTTGGAAGAATCAGAACACTCC 2073 30 100.0 36 .............................. TTGTAGTCATTTTCGTTGGAAGAATCAGAACACTCC 2007 30 100.0 35 .............................. GTTTCTGTTGCAAGAGTGGCTAGTGTCGTCTGAGT 1942 30 100.0 38 .............................. AGGTGTTTCACTATACACAGTCATACACATCAGGAATC 1874 30 100.0 38 .............................. CAGCGAAAGCAATTGCCGCGACTCGTGCATCTTCGAGC 1806 30 100.0 36 .............................. GTTAACGGTGGGCTTGTGATGGTCTCCTTGGCATGG 1740 30 100.0 38 .............................. TATGCAATAAACGGCACCAATACCCATAGAGGCAGCAC 1672 30 100.0 36 .............................. TTTCAATAAAGAAAGGGCATCGTGTAGAGGAAGGAG 1606 30 100.0 36 .............................. AATGTCAGACTATGCGGTATAGGTGCAAACCGTCTC 1540 30 100.0 38 .............................. GGCTTCGCCGAGCAATTGAAATGCTCCGGCGTAGATGA 1472 30 100.0 37 .............................. ACGATGTTCGGATCGAAGTTTTGTATCTTGTCGTTCA 1405 30 100.0 36 .............................. CTGCGAGCAATTGAGCGGCTCGGCGTGGGTCGCCGT 1339 30 100.0 35 .............................. ATCGTTTCGGCGAGCAACTGTGCTGCTCTCCTTGG 1274 30 100.0 37 .............................. CTTTATATCCGTGGCGTTTCCTTGCCTTGTTATCCTC 1207 30 100.0 34 .............................. TTTTTTCAGTCAAGTCCCTATGGAGATCACAAAG 1143 30 96.7 38 .......A...................... GAAAATTGATACAATGAATCTTTGACTAGCAACTTAAG 1075 30 96.7 36 .......A...................... AGAATGTGTTTGTTTCTTCCACGGAAATGCGTCTCT 1009 30 96.7 39 .......A...................... CTTCACTTAAGATTGACTTACGATATAGCTCTAATGCGG 940 30 96.7 38 .......A...................... ACTTATAAGCAACGAGTATTCATCCCAAAAACCTTTGT 872 30 96.7 36 .......A...................... TTGAATGTATAAATTGCATTTCTTCTGCTTCTGTTT 806 30 100.0 38 .............................. AAGAGATGATAGAAACCCTATAAAATACAACCAAATAA 738 30 100.0 38 .............................. GTAGTTCAACAAGGCCATAAGTTGCGCCTTGAACTCTT 670 30 100.0 36 .............................. GTGTGGATGACTCTTCCTGTTTCATCCACCCAAACG 604 30 100.0 34 .............................. TTGACGATACCGCAGGAAGCGACCAATCTACACC 540 30 100.0 39 .............................. AGTTAGGTCTCTTCGTCAAGCTATGCCTTGGTCTAATAA 471 30 96.7 37 .......A...................... TGTTTTAAAAATGTGCTGTATTGGGTCTTTACTGATG 404 30 96.7 37 .......A...................... CCTTGGCAGGTCTAATAATATGGTCTAACATGTATAC 337 30 96.7 36 .......A...................... TCACGCATACTTAAGTGTGCTTAAAATCGATTTTAC 271 30 96.7 38 .......A...................... AAATTTTTCTCTGTCTTAGTTGTAGCTCAAAAAATGGC 203 30 96.7 37 .......A...................... TCTTTTGCACACATAAGCCAAAGAGTCTTCTCGTCAT 136 29 86.7 0 .......A.................-..TT | ========== ====== ====== ====== ============================== ======================================== ================== 53 30 99.1 37 GTTGCGTGAGAACCATAGTGGTATGGAAAC # Left flank : CTTATTGTCGCACTAGATTACATGCTATCATTTAATGTGAACGCCATATTGCGGATTATCATCATCGGCTTTTCCGAACAGAGTTGCATTATCCTTCCCATAAGCCTTTCCCGAGTTAATAATTCCGTTACCAATCCTCGTCGGATCGATCGTATGCCATTTTCTTCTAGACTCATTTCCTAATAACACTTCTAGACCTATTTAGAATCATTCCTGTACAGTTTACACAGATACGACTGCAGATAGGTCACTTGATTGAAAGCGAAATCGTGAGCAGCTTTCTTCTGTAAGCTTCTGCTGGAGAGTGTCTCGCCGGTATTTTCCGCAATTGGTCTTCCTTAGAAGATACCGGCGCCTTCTCCCTCCACATAACACTGCGTCCATCTAGAATCAAATCCAAGCGAATCGCCGAAATGTAAATTCGATGTCGCTTACGAGGTATTCCCAATTGGTTGATTCTGCCTACCCAAAACCTGTATAATATCTTTGTAATAAAAGCG # Right flank : TGCTGCCTTCGGCAGGACGCTTTGCCGGGAAGATCATCCCGGGAAGTGATGCGCCGAAGAGCATCGGCGGACGCAATGCCCGGAGAATCATCCGGGGACGCAAGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTGAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 64-496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000358.1 Mesotoga sp. HF07.pep.5.2.highcov contig508, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 64 30 100.0 37 .............................. ATAATATCTAAGGCTGGGTATTCCTCGTTCCCCGCCT 131 30 100.0 41 .............................. GGAGCGGGGTATTCCCCATTCTCCCCTACCCAGGCGTACCC 202 30 100.0 36 .............................. TCAGTGCTGGGGGCCAGGGCTATAACTTTCCGGCCG 268 30 100.0 38 .............................. GTATGAGCATTAGAATCCGGACTGGCAGGCGGCTGGCC 336 30 100.0 36 .............................. ATAATATCCAGGGCAGGATGTTCCTCATCTGGTTCC 402 30 96.7 36 .....A........................ ATTGAAGACGGCTGACGGCTTTTCAAGATGGTCGAG 468 29 90.0 0 ........................-...TT | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 98.1 38 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : CTTGTATGAACCATAGTGGTATGGAAACGTTCGTAACCTTCCCTCGCGATGACCGCGGCAAGCG # Right flank : GCTGCCTTCGGCAGGACGCTGTGCCGGGAAGATAATCCCGGGAAGTGATGCGCCGAGAATCATCGGCGGACGCAATGCCCGGAGAACCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 229-731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000402.1 Mesotoga sp. HF07.pep.5.2.highcov contig509, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 229 30 83.3 38 C.CTT...T..................... GGGCAGGGTACTCCTCGTCCCCCGCTGCTGGGAACCAG 297 30 96.7 35 .......G...................... TAGTTAATTACGCTGAACTTATCAGCTTCGTATTG 362 30 96.7 39 .......G...................... TTTTTACCTGTTCCTTAACCTCTTTGATTTCCGCCATTT 431 30 100.0 38 .............................. ACATTTCCCGACGACCACCACACACATAACTATCAACA 499 30 96.7 39 ...T.......................... GGAAGAGATTGTGGGATTCTACCCATTTAAGGGCATCTT 568 30 100.0 38 .............................. GGAATTCCTTACGCCCATCGTTGGACGACCCGATGACA 636 30 100.0 37 .............................. GTTTTAGAGGATAAATCTGTTTGTGATATCTCGACCT 703 29 90.0 0 ........................-...TT | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 95.4 38 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : GATCATCCCGGGAAGTGATGCGCCGAAGAACATCGGCGGACGCAATGCCCGGAGAACCATCCGGGGACGCATGGCTGGCTTCGCCAGGAGGGAGAACCTCTCAAGAGCCAAGACGTTAGGTTGTAAGAACCAACTCAATTTGTCATCCTGAAAAGCTCCTGTTCAGGATCTGGTCTTTGATCTTAACGAAGGACGGGTCCATGCTCTTGGACGGTCAACGGAGGACGGC # Right flank : GCTGCCTTCGGCAGGATGCTGTGCCGGGAAGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : GTTGCGTGAGAACCATAGTGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1612-2642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000342.1 Mesotoga sp. HF07.pep.5.2.highcov contig562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1612 30 100.0 38 .............................. GTAAGCAAACCCTCTATTGTTCCTAAATCAATAGCTTC 1680 30 100.0 38 .............................. TCCCGCCTTCTGTCATACTCTGTGCTCTCTGTGAATAG 1748 30 100.0 36 .............................. GTGTTATTGCAGCGCCGATAACGGTGGTAATACCAA 1814 30 100.0 37 .............................. TGGGAGCAAATGGCCTGTAGATACGAAGCCGAGCTCT 1881 30 100.0 36 .............................. GCATAGCGTTTACGATACTTTTCATCGATCTCATCT 1947 30 100.0 36 .............................. GTATGGGAACCACACCCTCGACTTGTGGTTCGGAGA 2013 30 100.0 35 .............................. ACTTCAGTTCTTTTGTTGTAGATGGGTTTACGTAT 2078 30 100.0 38 .............................. GCCCCACTCGTCCACATCAAATACTTGTATTGGGCTTG 2146 30 100.0 35 .............................. GAACTTGACTGATTATCCAGGCGACCATTCCTTTA 2211 30 100.0 38 .............................. TGTTGTCCTCAACCTCCAGAATGTACTCACTCATTTCA 2279 30 100.0 34 .............................. ATTTTACAGCATGGCAACGGGTTTCTACTTTCGG 2343 30 100.0 38 .............................. ACTCAAACCCTTGAACTCAACTAGCCTCACTTTCTTCT 2411 30 100.0 35 .............................. GTGCATACGGCATATGAACCCGAAGTAATCTCCTG 2476 30 100.0 36 .............................. AATAGTATCTAGTCTAGTATGGTATGTAGTTAAGAG 2542 30 100.0 41 .............................. GCGGCAAACGTAGTATTAACTCTCTTTTCGCTCATGTTATC 2613 30 90.0 0 .........................TT..G | ========== ====== ====== ====== ============================== ========================================= ================== 16 30 99.4 37 GTTGCGTGAGAACCATAGTGGTATGGAAAC # Left flank : TCTTTCTGTCGGATCGTATTACATACAGTCTGGCTTGGTAACCCCCATATTTCGGATTAACTTTATCCGCTTTTCTGAATCGAGTTGTTTTATGCTCCCATAAAGGATCATCGAACTTAATAATTTCGTTACCGTCTCTCGTCGGATCATTCGTATACCATTTTCCTCTAAACTCATTTCTCAATAACACTTCCAGATCTATTTAGAATCATTCTTGTACAGTTTACATAGATCCGACTGTGGATAGGTCATTTGATTGAAAGCGGAATCGAGAGCAGTTTTCTTCTGTAAGCTTCTGTTGAAAGGTGTCTCCCAGGATTTTAGACAAATGATCTTTCTTGGAAGATGCAGGCCAGTTCTTCACACGGAAAACAATCACGATTTCTCGAATCGAATCCAGACAAATCTCCAAAATACAGAAAGAATAACTCTTGTGAGAGCTTTCCGTTCATTTGATTCCGCCAGCCCAAAACCTGTATAATATCTTTGTAATAAAAGCG # Right flank : AGCCGTTGTGGGTGGTTCGTGGTTGGCGGTTGGTCAGGAGCAAAGAACAAGAACTAGTTCATTGTGACTGAGGAAGGCTATTTGATCAGAACCAACACAGCTTGTCTTCCTGAAAAGCTCCTCTTCAGGATCTGATCTTAGATCCTTCCGGTGGACGGGTCCATGCTCTTGGACGGTCAACGGAGGACTGCTCTTGTATGAACCATAGTGGTATGAATTGCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTGAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 927-297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHJ01000297.1 Mesotoga sp. HF07.pep.5.2.highcov contig576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 926 30 83.3 37 C.CTT...T..................... TTATCAGCGGGACACCGCATAGCTGGTGTCATGTTGA 859 30 100.0 36 .............................. GTCAATACGGCGGCGAGAACCTCTTCGTACCGCACT 793 30 100.0 39 .............................. AGATATTCGTCTGCCATTTCAAAGTATTCGCAAGCATCG 724 30 100.0 36 .............................. TGTAATTGCTTTCCATTCGTCTAAGAGCAGGTCTTC 658 30 100.0 36 .............................. CTGATATACGTTTTTGAATCCTACCATTGACAGTTG 592 30 100.0 39 .............................. TTGATAGGCTCTAGACAATAATCATAATCTCCACTTTCC 523 30 100.0 36 .............................. TTTTTACATACGTGTACACGCATGCGGATATAAAAT 457 30 100.0 38 .............................. TTCACAATCATCTATCATCTGATGCAGATAAGTTTTTA 389 30 100.0 34 .............................. TGAAACCAGGATTCAGCTTTCAGATTATCAATAG 325 29 90.0 0 .........................-..TT | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 97.3 37 GTTGCGTAAGAACCATAGTGGTATGGAAAC # Left flank : GCTTCGCCAGGAGGGAGAACCTCTCAAGAGCCAAGACGTTAGATTGTAAGAACCAACTCAATTCGTCATCCTGAAAAGCTCCTGTTCAGGATCCGGTCTTTGATCTTAACGAAGTACGGGTTCATGTTCTTGGACGGTCAGCGAAGGACG # Right flank : TGCTGCCTTCGGCAGGACGCTGTGCCGGGAAGATCATCCCGGGAAGTGATGCGCCGAAGAACATCGGCGGACGCAATGCCCGGAAAAGCATCCGGGGACGCAAGGCTGGCTTCGCCAGGAGGGAGAACCTCTCAAGAGCCAAGACGTTAGATTGTAAGAACCAACTCAATTCGTCATCCTGAAAAGCTCCTGTTCAGGATCTGATCTTTGATCCTTTCGGTGGACGGGTCCATGTTCTTGGACGGTCAACGGAGGACTGCTCTTGTATGAACCATAGTGGTATGGAAACAGATCATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGTAAGAACCATAGTGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //