Array 1 157176-158547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPO010000006.1 Nocardia farcinica strain BJ06-0108 NODE_23_length_204590_cov_14.806307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 157176 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 157237 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 157298 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 157359 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 157420 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 157481 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 157542 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 157603 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 157664 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 157725 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 157786 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 157847 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 157908 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 157969 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 158031 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 158092 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 158153 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 158214 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 158275 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 158336 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 158397 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 158458 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 158519 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47462-46153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPO010000036.1 Nocardia farcinica strain BJ06-0108 NODE_118_length_64169_cov_13.073171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47461 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 47400 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 47339 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 47278 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 47217 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 47156 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 47095 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 47034 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 46973 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 46912 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 46851 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 46790 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 46729 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 46668 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 46607 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 46546 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 46485 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 46424 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 46363 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 46302 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 46241 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 46180 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96810-93565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPO010000023.1 Nocardia farcinica strain BJ06-0108 NODE_67_length_108219_cov_13.299532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 96809 28 100.0 33 ............................ CCCACCGCAGACAAGGAACTGGTGTCCGACGTC 96748 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 96687 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 96626 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 96565 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 96504 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 96443 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 96382 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 96321 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 96259 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 96198 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 96137 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 96076 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 96015 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 95954 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 95893 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 95832 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 95771 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 95710 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 95649 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 95588 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 95527 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 95466 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 95405 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 95344 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 95283 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 95222 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 95161 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 95100 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 95039 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 94978 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 94918 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 94857 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 94796 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 94735 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 94674 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 94613 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 94552 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 94491 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 94430 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 94369 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 94308 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 94246 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 94185 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 94124 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 94063 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 94001 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 93940 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 93880 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 93819 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 93593 28 71.4 0 ...G..TG.....CG.TC..A....... | G [93566] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 51 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 108049-105994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPO010000023.1 Nocardia farcinica strain BJ06-0108 NODE_67_length_108219_cov_13.299532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 108048 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 107987 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 107926 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 107865 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 107804 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 107743 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 107682 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 107621 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 107560 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 107499 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 107438 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 107377 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 107316 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 107255 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 107194 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 107133 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 107072 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 107011 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 106950 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 106889 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 106828 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 106767 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 106706 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 106645 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 106584 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 106523 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 106462 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 106401 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 106340 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 106279 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 106218 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 106158 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 106097 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 106021 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= =============================================== ================== 34 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGG # Right flank : GGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54312-55010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPO010000038.1 Nocardia farcinica strain BJ06-0108 NODE_127_length_58664_cov_13.640603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54312 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 54373 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 54434 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 54495 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 54556 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 54617 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 54678 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 54739 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 54800 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 54861 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 54922 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 54983 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57253-58493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPO010000038.1 Nocardia farcinica strain BJ06-0108 NODE_127_length_58664_cov_13.640603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57253 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 57314 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 57375 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 57436 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 57497 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 57558 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 57619 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 57680 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 57741 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 57802 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 57863 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 57924 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 57985 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 58046 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 58107 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 58168 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 58229 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 58290 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 58351 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 58412 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [58466] 58466 27 85.7 0 ........A.T....A.-.......... | A [58474] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //