Array 1 143925-143528 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000013.1 Streptomyces sp. Ru71 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143924 29 100.0 32 ............................. TTGGGAGGGGGCAAGGGGCACCTCCGCAGGAC 143863 29 100.0 32 ............................. GGAGCGAAGGCAGGAGCCGCCGCGTCCAGGGT 143802 29 100.0 31 ............................. TTTGCCGCCGCCGGGCCGGAGCGGGACCGTC 143742 28 93.1 32 .................-......A.... TCGAATGTGTTGGCGAGGTCGGAGACCTTGGT 143682 29 100.0 32 ............................. GCGAAGGCGATGACGGCGGGCAGGCCGACGGT 143621 29 93.1 32 ...T............T............ ACGCCCGTCATGGGGCAGCTGGCCGCGAACCC 143560 29 89.7 0 ....................C.....G.A | CA,CC [143532,143536] ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 CTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : GCATGCGGGGATGGTCCCCGGTCCCGCGACTGCGGGGCCTTGTGCACGG # Right flank : GGGCGCGAACGGGCCAGTCATCCCCAGCCCGCGCTCTCGACTTCACAATTTCTCCGCGGCCCCAACCCCCAGTGATCACAACCGGTAGGCTCTCGACCGCACTACAGGCACAACTGAGGGGGGATCACCTCATGCGCACCCGCTACGCCGCCCTGGCCACTGCCGCATCCGCTGGACTTCTGGCCGCACTCGCCGCCGCGCCCGCCCAGGCCGCCGAGTACTCCTCGGCCCTGAAGATCAAGGGCATCCAGTACGACGCACCCGGCCGCGACGACAACCGCTGCAACGGCGGCAACACCAAGAACGAATACCTGACGATCAAGAACTACTCGCGTACGAACGTTAACCTCAAGGGCTACGTCGTCAAGGACGCCGCAGGCAACAAGTTCGCCTTCACCGCCAGCCACACCCTCGAACCCGGCGACTACGTCCAACTGCGCGGCGGCCGCGGCACCGACTCCGACCGCGACAACGTCGTCTACCGGCAGAACTGCAACTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1029-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000166.1 Streptomyces sp. Ru71 contig00166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1028 29 100.0 32 ............................. CCTTCCGAACGGGTACGCCGTACCCCTTCCGA 967 29 100.0 32 ............................. GCCCCCGCCGTCGTACCGGGAGATGGCAGCCC 906 29 100.0 32 ............................. TGGGCATCGGCCGGGACGCCGTCCCCGTGTAT 845 29 100.0 32 ............................. AGGGGATACAGGACCACGGGCCCCGGTAGTCT 784 29 96.6 32 ........................A.... GCAACGCGGCGCGCGCTGGACTCGCGGCCGTT 723 29 100.0 32 ............................. AGACGGAGGGCGAAGGGTAGTCGAAGGGGAGT 662 29 100.0 32 ............................. CTCATCTACGCAGCCGGTACCACCGTGCTGCC 601 29 100.0 32 ............................. TCGGTGCGCGAGATGTACGTCTTCCAGCACTA 540 29 100.0 32 ............................. TGCGGGTCCGGGTTCATGTGGTTCTGGACCAG 479 29 100.0 32 ............................. CCTGGTGCGGACCCTGTGCACGCACACGCCTA 418 29 100.0 32 ............................. CGGACAATGACCACATACGTGGAGAACACGGG 357 29 100.0 32 ............................. ACCTCTGAGCACGCCTGGCGCGTGGAGCACGG 296 29 100.0 32 ............................. GAAACTCCCTTTCGTGGGAACGAAACTCCGCC 235 29 96.6 32 ............................G TCCTGCGCAGGCTGGGCGTACCCGTTCCACGT 174 29 100.0 33 ............................. GACCTCAAGCTGCCGGGATCCACCGCTGCGGAC 112 29 89.7 32 TGC.......................... TTCATCCTCGACGACTCCCCGAACCTCACCCT 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 CTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CCGAAGCCTGCTCCCCGCGTCCGCGGGGATGGTCCCAGCGACGGGATGCTGTGCTCGAACCGGATCCGCTGCTCCCCGCGAACGCGGGGATGGTCCCCACCGCGCGCATCCAGCGGCGCGGCAGGCGGCCTGCTCCCCGCGTCCACGGGAAAGGTCCCACGCACCACAGGCATGAAGGGCACCGACCGTCTGCTCCCCGCGCACGCGGTCCTGGAGCTGCGGGTTCGGTGTCGTGCGGAGTGGCTTCACTGCACCTTCTGGGGAAGGTCCCGCGCCGGCGACCGCGTCTCATGCGCCTCGGTTCCGCTCACCATGTGGACGGGCTTCCCGAGTCATCAAACGGGCTGACCGCGCCCGGCTGTCGCTACCAAAGTCCCGGAGGGTGTTTCGGGCGCACACTAGCAGTAGGGGTAGATCAGAGTGTCTTGTCGTGAATGCCGGGTTCAGTAAAAGTGATGAGGAGGGAGTTGACGCCGCGATAGAACTGCAGGTGAGCGAGT # Right flank : CGAAGAGGCGGGCCGGGAGTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1705-1371 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000166.1 Streptomyces sp. Ru71 contig00166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1704 29 93.1 32 ..............T......T....... CCCACCAGCCCCATAGGGCTTGGGAGTGGCGG 1643 29 100.0 32 ............................. TGTGGCGGCCGCCGACCCCGGGAGGCCACATG 1582 29 100.0 32 ............................. CCCGCCGGCTAGCGGCGCCCCCAGACCGAAGC 1521 29 96.6 32 ...........G................. AGCGACGGGATGCTGTGCTCGAACCGGATCCG 1460 29 89.7 32 ...........GAA............... CACCGCGCGCATCCAGCGGCGCGGCAGGCGGC 1399 29 86.2 0 ...........G...A....A.A...... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 CTGCTCCCCGCATCCGCGGGGATGGTCCC # Left flank : CGGGGTTGGTCCCGCAGCCGGCGCCGCGTGGGAGTCGGTCGTCA # Right flank : ACGCACCACAGGCATGAAGGGCACCGACCGTCTGCTCCCCGCGCACGCGGTCCTGGAGCTGCGGGTTCGGTGTCGTGCGGAGTGGCTTCACTGCACCTTCTGGGGAAGGTCCCGCGCCGGCGACCGCGTCTCATGCGCCTCGGTTCCGCTCACCATGTGGACGGGCTTCCCGAGTCATCAAACGGGCTGACCGCGCCCGGCTGTCGCTACCAAAGTCCCGGAGGGTGTTTCGGGCGCACACTAGCAGTAGGGGTAGATCAGAGTGTCTTGTCGTGAATGCCGGGTTCAGTAAAAGTGATGAGGAGGGAGTTGACGCCGCGATAGAACTGCAGGTGAGCGAGTCTGCTCCCCGCGCATGCGGGGATGGTCCCCCTTCCGAACGGGTACGCCGTACCCCTTCCGACTGCTCCCCGCGCATGCGGGGATGGTCCCGCCCCCGCCGTCGTACCGGGAGATGGCAGCCCCTGCTCCCCGCGCATGCGGGGATGGTCCCTGGGCAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCATCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 708-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000122.1 Streptomyces sp. Ru71 contig00122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 707 29 100.0 32 ............................. GCCGTCAGTGGAGGCACCGGTTGCCCTTCGGT 646 29 100.0 32 ............................. GGCGCGAAGGTCGGCGCCAGTGCGTCGAGTGC 585 29 100.0 32 ............................. TCCCCAGCCCCCGCTCTTTCGTGGGAACGAAA 524 29 100.0 32 ............................. CAGCCGGCCTTGGCCAGGCCGTGGTAGGCGAA 463 29 100.0 31 ............................. TGCTGTGGTCAAGGGACACGGAAAGAAGCAG 403 29 100.0 32 ............................. GACCGCGAGGTCCAGGACCACCTGGAGCGGAT 342 29 96.6 32 .................A........... AGTCGGATCCTGGGGGCGCTCTCTGCTCGAAC 281 29 96.6 32 ........T.................... AACTCCGCCTCGTGGGCCATCCAGCGCGAGTT 220 29 100.0 32 ............................. GGGCGGGGCTTCCTGTGCGTGAACGACGGACC 159 29 96.6 32 .................T........... TCGCCAAACCGCAGAGAGGGGTTGGAGCGCTT 98 29 93.1 31 .................A.......C... CCCCAGTTGGATGCCGTCGTCCTGGTCTCAG 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 CTGCTCCCCGCATCCGCGGGGATGGTCCC # Left flank : GCATCTCCCGCTGGCCCCCGCGTCCGCGGGGATGGTCCCCCGAACCGGGCCCGCGTCTCTACGAACATGCCCTGCTCCCCGCGCATGCAGGGATGGCCCGCACGTGGCCGGCGCCTCCGGATGGGTCGTGCGCTGCTCCCCGCGCATGCGGGATTGTCCCCAGCGGCTGAAGTCCCAGGCGAAGAGGCTCAGCTGCTCCTCGCGCATGCGGGGGATGGTTCCTCCTCTCGCTCCTCGTCGGCGCAGGCCCGGAACTGCTCCCCGCGCATGAGGGGATGCCCCCGGCACGAGCCGCTCAAGATGCCGCACTGCTCCCCGCGTGGGGGGTGATATGGAAGGTGAAGCTCGCGTTCGGTCGCTGGCAGGTGTGGTGAGAGCCGTAGGATGCCTTGCGAGTTGACCACTGGCTTCCAAATACATGGGACTTGCGCGTAATGTCCGACCCGGTGAAAGTCATGAACGACGGCCTGCCCCCAAAGTAAACGCACAGGTCGGACAGT # Right flank : CCGCTACCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCATCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3656-3858 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000122.1 Streptomyces sp. Ru71 contig00122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 3656 31 83.9 30 .....G........G..........A..CG. GGTGAGGATGTCGTAGGCCTTTTCCATCTT 3717 31 100.0 19 ............................... GGCGGGCCCGGTCCAGAAC Deletion [3767] 3767 31 58.1 30 .TCCGGGCAGGG.................GG CTAGCGGGACGCCTCGGTGGGCTGGTCGTT 3828 31 90.3 0 .........T....G..............A. | ========== ====== ====== ====== =============================== ============================== ================== 4 31 83.1 27 GGGACCATCCCCGCATGCGCGGGGAGCAGCC # Left flank : GCGTGTGCGGGGAGCAAGCCAGCCACGTCTGCAGCTGCTTGGCGTACTTGGGACTATCCCCGCGTGTGCGGGGAGCAGACCGGCAACACCAACACCAATCCTGAGCTGCGGGGACCATCCCCGCATCCGCAGGGAGCAGTAGTAGTCCGGGTACCAGGCGATCAGGTCACCGGGGCCATCCCCGCATCAGCGGGGAGCAGACTCGCTTACCTGCAGTTCTATCGTGCCGTCAGCTCCGTTCTCATCACTTTCACTGAACCCGGCATTCACGACAGGACACCCTGATCTACTCTTATTATCAGTGTGCTGCCGGAACCCCCTCCGCGACCGCCTGGCGCGACCTCGGTAGCGGCAGTCGGGCGCGGTCAGCCCGTTGATGACTAGGGAAGCCCCTCCAGATGGGGAGCAGAACCGAGGCGCCTGAAACGCGGTCGTCGGCGCGGGACCCCCCTGCTGGGCAGGGGAAGGCCACTCCGCCCAACAGCGAACGTGGCAGCGAC # Right flank : CCAGGTCCGGGTACAGGCCCCGGACAGCGGACGCCTGCACAGGCTACGGCTCGCGCCAGGACACGCGCCCGTCAGCCGGTCGTCAGTGCCAGCGGCGGCTGCTCTCGACGGCCGACGAGATCGTGCGTATTGACACGGGGTTATCTGGTGGTGGCTTTGACATCCCATTGCCAACGCGCTCCTGTCGGGCCGCCCTCACCCGCTGCGCCACCGCGATCCGCTCTTGGCGGACTCGTTCTCGGAGCCTCTGGGCCTGTCTGGCGGCCTTGGCGGCTTTCGTACGCTGCTTCTTCGCCACGCTTCAATCGTCGCCTGAAATCGGGAAGTTGAGTAGCCTCTCGACGTTGACCGTCGCGTACCGGACCGTTGGACCATCCCCGCGTGCGCGGGGAGCAGATACCCGAGCTGCGCGCCCGCATCCAGCGCGTGGGGCCATCCCCGCATGCGCGGGGAGGAGCCTCGCTTACCTGCAGTTCTATCGCGTCGTCGGCTCCTTTCGC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.15, 5:-1.5, 6:0.25, 7:-0.44, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACCATCCCCGCATGCGCGGGGAGCAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 5958-4654 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000122.1 Streptomyces sp. Ru71 contig00122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 5957 29 82.8 30 .G.....T.....C........C.....A CCGCCGAAGCTATCCAAGCTGGGCCGGGCA 5898 27 93.1 32 .............--.............. GTCTACCGCAAGGGCACTCTCGGCCTGGTCGC 5839 29 93.1 32 ...........A.T............... GCGATGTTCCCCCGTCTGTTGAACTGGCTCGA 5778 29 100.0 32 ............................. ATGGGGCGCGTCACCACCGGGGACCGCACCGT GG [5756] 5715 29 79.3 90 ....CA........T.........AC..A TCCACAGAGTCGCCGACAGCGGCATCATCACGTGCTCCCGCGCATGCGAGATGTTTCCAACGGAGTGCGCGCGATGTGGATGGCATGGGG T [5689] 5595 29 93.1 32 .........................C..G GCGTATAACGTGATGGGCTGTGCGTCGCTTCT 5534 29 72.4 30 T.......T..A.CT....C..A..C... GCCGTCCATAAGCGCCTTCCTCAGGGACTT 5475 28 79.3 33 ........T..A.CT..A.......-... AGGCCGTGCGAACCACGCCGGGGGCGGAGACCC 5414 29 96.6 32 ...........C................. TGCCTGTCGGACAGGGTGACCGTGCCAATCAG 5353 28 86.2 32 G.........T.....G....-....... CCGAGCTCGGCGTCGGCTTCGCTCGCCGCAGC 5293 29 96.6 32 ...............A............. GAGAACGAGCACCGCATCGGCCTTGGCAAGCC 5232 29 89.7 32 ...........C.CT.............. GACTTCGCGAGCGTCAATCAGTTCGCGAACGG 5171 29 82.8 30 ......TT....T..........A.C... GGCGACCCGTCACAACCGGCCTAAGATCGG 5112 29 93.1 33 .............CT.............. CAGCGTGGTCGGCGTGAGGGTCTGCAGCAGCAC T [5085] 5049 29 79.3 32 ......T.......T......G....TTA GCCGTCGAGGACACGTTCCGCAACGCCGGCGC 4988 29 100.0 29 ............................. TCCTGTGGTCGTCAATGCTGTTCGGTGGC G [4971] 4929 29 72.4 32 ACA........ATC..........A...T TGGGGAAGGATGATCCCGGCCTTCTTGAGTAT 4868 29 86.2 36 ........TT......T.....C...... GCCACTGCGGAAGTACGGCTCGGTGCACGACCTGCC 4803 27 89.7 32 ..........--.G............... CTCGCCATGGACGCCCGCCTCGACCAAGCCGC 4744 29 93.1 32 .........T...............C... GACTCGAAGTACAACCGGTGGTTCGGCAAGAT 4683 29 89.7 0 ....C...G.....T.............. | T [4657] ========== ====== ====== ====== ============================= ========================================================================================== ================== 21 29 88.0 35 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGTAGCCACCTACGATCTCGCCTCCGGCAACAACCAGGGCGACGGCGACAAAGGCGGCGTCACCGGTATCGCAGCCGTCTCCCGCCTCGGGGAAGATTCCGTCGACTGCCTGATCCTGTACCAGCAGCCGAACGGCACGATCACCTACGACCACAAAGGCGTGCAAAGGGCCGACCTCGGACAGCGCTCCCCAAGCCACGACGTAACCGCCTACCGGCGCCAGCAAAAGGACCTACTCGCCAACACACTCGCGCTCCCCGCACGCTGGTGGGACGGCCGAGACGGCCTGCAACCGATCGCAGACTGGCACCACCACCCACAGCCCGCATTGAGAAACAAACCAGTCATCCTCCTATCGCCAGTCGGCACGTGTCTCAGCGGTCCCGTCGGCAAGCTCCGCTACGACCACACCACCGGACTGGAACGCCTATGATCATCCCCACCCCCGCGCCAGCCAGAACGCGGAAGGCATTCTCCGTCATGGCAGGAGCCCCCCGCGA # Right flank : GGGACCGCGAGGAAGGGGCATCAGATGTCGACCTGGGCCGCCGCCGGCGGGGTCTTTTCGACTGAGCACCCCGTGAGCCTTATGTCCGGGTACCTACCGCTGACGCGACGCCTTCGTCCAGACCTCCGCCAAGGGGCACAGGGTCCCGGTGAGCGGGGACGCGCAGAGTCCACTCCTGGTCTCCGGTCGTCGGTCAACTGTCCGACCCGCTTGCGCGGCAGCTCCAGCTCAACCCTCGATGACGGGTCGCTGGATTGTGCTGTCTTGTCTGGAATGTCGGATCCATTGAAAGTGGTGCGAAAGGAGCCGACGACGCGATAGAACTGCAGGTAAGCGAGGCTCCTCCCCGCGCATGCGGGGATGGCCCCACGCGCTGGATGCGGGCGCGCAGCTCGGGTATCTGCTCCCCGCGCACGCGGGGATGGTCCAACGGTCCGGTACGCGACGGTCAACGTCGAGAGGCTACTCAACTTCCCGATTTCAGGCGACGATTGAAGCGT # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 14335-15033 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000122.1 Streptomyces sp. Ru71 contig00122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14335 29 93.1 32 ..A.............T............ GCGTACAACTCGATGGGATGCAACGGCCCGCT 14396 29 100.0 32 ............................. ACCGCGTCGGCGATCATGCTGTGCGCGTCGGC 14457 29 96.6 32 .................C........... GTCACCGTGCCGCAGATCCGCTCGCGCCGGGA 14518 29 100.0 32 ............................. TGGACCGGCGAACGCACCGAGACCGGCTACGA 14579 29 96.6 32 ....................C........ ACGGTGTCGGCAACGGTATGTGGCTGGGGCAG 14640 29 96.6 32 ..............T.............. ACCTTCGAGCACACGGTGGACGACCGCACCTC 14701 29 100.0 32 ............................. AGCTCCGGCTGGCTCTTGAAGAAGGCGTAGCT 14762 29 100.0 32 ............................. GATCGACGGCACCCGTCGTTGAAGTTGACGCT 14823 29 96.6 32 ...................C......... CACATCAGCATGGCCACGCTCAAGAAGCTGAA 14884 29 100.0 32 ............................. ATGCCGTGCGCCTGGGCGTGCGCGAGGAGCTC 14945 29 96.6 31 ..............A.............. CGCTCAGCGGCCGCCGAGGCCCTGCGTGCGG 15005 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGTTCACGCAGAGACTGCAGCCCCAGGGCGAACCCGCCACCGGGCCGAACGGCATCAAGCGGATCGGAGCCGACGCCGATCCCGCACGCATCTCCACCACGATGCTGCCGCCACTCGTCTCAACAGTGAAGAAGGGCCTGAAAGTCGTCCGAGCCGAAATCCGCGGACAACTCACAGTCACCGACCCGACCACCTTCACCAGCACCCTCACCGAAGGACTCGGTAAAGCCCGATCCTACGGAGTTGGCCTGCTCCTCGTACGCAAGTAACATCCCACCGGCCGGACTCCCCGATTCCGGCCGGACCTGACACATTCTCCGCGCCAGCGGAGATCGGCCAGATGCACACGAAGACATCGACCGATTCCCCGCGCAGGCAGGGACTTCCACCCAACCACATCCCTCCCACGGGAGCGGTGTGCCGTTCATGCTCTCTGCTTGGTTACTGCCTAAACCTCCTGGCATCGTCCCGTCGTCAGTACCCCGGCCGGCTACGCCTC # Right flank : GTCGCCATGTCGAACGTCGGATCCGGCTTCC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45224-44767 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSS01000060.1 Streptomyces sp. Ru71 contig00060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45223 29 100.0 32 ............................. AGGGCGACCTCCGGCTCGGGGAGGAACGCGTT 45162 29 100.0 32 ............................. GAGCCGCTCGCAAGGGCGCGCGAGGCCGCCGC 45101 29 100.0 32 ............................. GCGCTGGAGAAGCACTTCCGCCAGCCCGGCGA 45040 29 96.6 33 ........T.................... CCTCGCCCAGTCCGCGCGTGCGTTCGCCCGCGA 44978 29 100.0 32 ............................. GCGACTTCGGGCTCACAGGACCCTTCTACACC 44917 29 100.0 32 ............................. TCTCCGCCGTCAGCAGGGTGAACCGCCCCGGT 44856 29 100.0 32 ............................. CACGAAGTACCAGCTCGGACAGTTAGACAGTC 44795 29 96.6 0 .......G..................... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : | # Right flank : GGCGCCGGCCGGTGGTGCTTGCAATTACTCGCGCACCAGACGCAGCGCCATCGCCCTTGGTGGGAGAAGGGGGAAGCTCCTTGTGCCCCAAGAGCCGCCGGCACCGGTTGGGTCGGATGCCCCAACCGGTGCCCCACTGCCGTCGTGCTGTCTGCGGTCGATGCCCTGCTGAAGCAGCACGATCCGTGTCGTGCCCCATTGCGAGCGGCCGCCCGCTACGCCGTCGTCCGCCACACCGCTGTCCGGGAGGGGGCAGGCCTACAGTTGCTCTCTACGACTTGCTGAGGCCCGCAGTGCCCAGACGCTGGCGACGTGCGCACCTCGGGGCAGGCCGCGCAGGGTGGAATTAACGCCCCAACGCCTCCCGCGAGGTGCGAAGTTCCACGGTCCGAACGAAGTCTTCCCCCCGGTGGGCCACCAGAGAGCGTGGGTCGTCTGTGCCCATGGGGAAGGGCCAGTCGCTGCCCAACACCATGCGGTCCTCCCCGAAGGTCGTCACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //