Array 1 197488-195384 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWT01000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUC046 NODE_2_length_409780_cov_34.3715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 197487 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 197426 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 197365 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 197304 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 197243 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 197182 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 197121 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 197060 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 196999 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 196938 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 196877 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 196816 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 196755 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 196694 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 196633 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 196572 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 196511 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 196450 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 196389 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 196328 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 196267 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 196206 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 196145 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 196084 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 196023 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 195962 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 195901 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 195840 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 195779 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 195718 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 195657 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 195596 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 195535 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 195474 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 195413 29 96.6 0 ............T................ | A [195386] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 215498-214250 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWT01000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUC046 NODE_2_length_409780_cov_34.3715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215497 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 215436 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 215375 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 215314 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 215253 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 215192 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 215131 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 215070 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 215009 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 214948 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 214887 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 214826 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 214765 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 214704 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 214643 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 214582 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 214521 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 214460 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 214399 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 214338 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 214277 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //