Array 1 1526-7846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRO010000002.1 Aphanizomenon flos-aquae FACHB-1171 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1526 37 94.6 41 ...................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTAA 1604 37 94.6 37 ...................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAGA 1678 37 94.6 34 ...................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCATA 1749 37 94.6 35 ...................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGGA 1821 37 94.6 39 ...................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAGA 1897 37 100.0 36 ..................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAAA 1970 37 100.0 38 ..................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAGA 2045 37 100.0 36 ..................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCAA 2118 37 100.0 43 ..................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGTA 2198 37 100.0 40 ..................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAGA 2275 37 100.0 40 ..................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCACA 2352 37 100.0 35 ..................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAGA 2424 37 100.0 35 ..................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGGA 2496 37 100.0 40 ..................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTAA 2573 37 100.0 33 ..................................... CCTATCAATGAAATAATCGTCAATGCAGTCTTA 2643 37 100.0 37 ..................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGATA 2717 37 100.0 43 ..................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGAA 2797 37 100.0 36 ..................................... AAAAAATCTCTCCTACCAGAGCCGCGATGACAGGTA 2870 37 100.0 40 ..................................... AACCCGCTTAATGGGCTGGTATGTGCAGATAAGATATATA 2947 37 100.0 35 ..................................... CTCCGAAGGATGGGTAACTTCTGCTACGCAAAGCA 3019 37 100.0 35 ..................................... CAAAAATATCTCGATCAACATGATCTTTTAATTCA 3091 37 100.0 38 ..................................... TTATGCTTCTGAATCTGAGGTCGCTCCTGACATAGAAA 3166 37 100.0 35 ..................................... GGCAAATTTAGTGCTGACAATTTCCAAGTGATCTA 3238 37 100.0 37 ..................................... CAGCATTGCCGATGCTAAATTCGTTTGGTTTAACGGA 3312 37 100.0 44 ..................................... CAATTATTTCGCCATCCTGAATCTTGATGTAATCACGGCGCAAA 3393 37 100.0 36 ..................................... TTCCCCATTTTACTCAAGAGAGATAGAGCATTTATA 3466 37 100.0 36 ..................................... TTCGGGTCTGTCCCCTACCATCAAAACTTCCTCTAA 3539 37 100.0 33 ..................................... GAATCAATGAAAATGGATATCAATGGACTAGAA 3609 37 100.0 37 ..................................... TTCTTCTTTGATGTGATTGAGTCAGGGGGTAAACTCA 3683 37 100.0 35 ..................................... AAATAAATAATTTCATCACCAACTAAGGCACAATA 3755 37 100.0 37 ..................................... TCCTTCGCAATCCCTACCTCTAGCAGTACAACACTAA 3829 37 100.0 37 ..................................... TGATAATTAATGATTCATCACACTGAAATCTTAAAGA 3903 37 100.0 36 ..................................... ATGATATAAATGTGAGGCAAGGGAGGAAAGCCCAAA 3976 37 100.0 43 ..................................... GAGTTGGGAGAAGGAACTAAAACCTCAGCGAGAGTAGTAGGAA 4056 37 100.0 36 ..................................... ATAGAGAGCTCTTGACTCTGGAGAGCCAAAGAACGA 4129 37 100.0 36 ..................................... AATGGTGAGTTCTGGACTGGTAAAAATTGGGGGAAA 4202 37 100.0 37 ..................................... GAAAATTGACGTAAAACTGGAGAGTAAAAGTAAAAAA 4276 37 100.0 38 ..................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCAA 4351 37 100.0 38 ..................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGATA 4426 37 100.0 39 ..................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTCA 4502 37 100.0 36 ..................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACGA 4575 37 100.0 35 ..................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGCA 4647 37 100.0 36 ..................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAAA 4720 37 100.0 36 ..................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAAA 4793 37 100.0 38 ..................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTAA 4868 37 100.0 41 ..................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAGA 4946 37 100.0 38 ..................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTTA 5021 37 100.0 35 ..................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAGA 5093 37 100.0 37 ..................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACTA 5167 37 100.0 36 ..................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAGA 5240 37 100.0 37 ..................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCTA 5314 37 100.0 40 ..................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCAA 5391 37 100.0 34 ..................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAAA 5462 37 100.0 34 ..................................... TACAATCTATTAATGATTTAAAATCCAATTTAGT 5533 37 100.0 39 ..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTGA 5609 37 100.0 38 ..................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATAA 5684 37 100.0 36 ..................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAATT 5757 37 100.0 37 ..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAAG 5831 37 100.0 35 ..................................... TATGCCAACATATTCTGATATTTTCGATAACAACA 5903 37 100.0 38 ..................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAGA 5978 37 100.0 36 ..................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCCG 6051 37 100.0 37 ..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAGA 6125 37 100.0 41 ..................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACAG 6203 37 100.0 35 ..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAAA 6275 37 100.0 33 ..................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGGG 6345 37 100.0 33 ..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTTC 6415 37 100.0 38 ..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGAA 6490 37 100.0 33 ..................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCTT 6560 37 100.0 35 ..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGATA 6632 37 100.0 38 ..................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACTT 6707 37 100.0 36 ..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAAA 6780 37 100.0 35 ..................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAATT 6852 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 6929 37 100.0 34 ..................................... ACTCCTGTCCAGCAGCAGAGTTTTTTCAGCTCTG 7000 37 100.0 34 ..................................... ACTATTAAGTTAGTCAGCAAAAATGACAAGTTTA 7071 37 100.0 39 ..................................... TGAATATCAACAGTATTAAAGATGCGATCGCTCCAAATA 7147 37 97.3 37 ........................A............ TAGCCTGAATCACTTTAAATACCTGTTGAATAAAGTC 7221 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 7298 37 100.0 37 ..................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGGT 7372 37 100.0 36 ..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTGC 7445 37 100.0 41 ..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCAC 7523 37 100.0 37 ..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTATG 7597 37 100.0 34 ..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGTT 7668 37 100.0 34 ..................................... AGCGCAAATAATCTGACCTGACAACGGATAACTT 7739 37 100.0 34 ..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATGA 7810 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 86 37 99.7 37 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCCA # Right flank : CAAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 28534-32653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRO010000040.1 Aphanizomenon flos-aquae FACHB-1171 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 28534 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 28608 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 28680 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 28752 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 28824 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 28896 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 28966 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 29039 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 29109 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 29183 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 29256 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 29328 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 29403 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 29480 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 29551 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 29628 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 29701 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 29771 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 29839 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 29911 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 29988 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 30056 37 100.0 34 ..................................... ATAGTCCCTATTAGAGAGGATTGGGAGATGTATA 30127 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 30198 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 30272 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 30345 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 30418 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 30491 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 30561 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 30636 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 30708 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 30780 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 30852 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 30924 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 30996 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 31067 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 31136 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 31209 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 31280 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 31351 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 31428 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 31502 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 31573 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 31646 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 31722 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 31796 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 31869 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 31947 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 32022 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 32093 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 32165 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 32240 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 32312 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 32383 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 32451 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 32521 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 32617 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : CAAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 93898-95141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRO010000014.1 Aphanizomenon flos-aquae FACHB-1171 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 93898 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 93972 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 94045 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 94122 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 94199 36 100.0 40 .................................... GATTTAATACTAGATGAATTAATCAACCAATCAATGATAC 94275 36 100.0 37 .................................... GTTACAGGAAGTAATGGTACTAACTTAGGGGGGTTAG 94348 36 100.0 40 .................................... AAATGGGTTTTGTTGGCGGTAAGGTTTTAGAGCCTAGTTG 94424 36 100.0 42 .................................... CAACAGATAACTATCAGTGCCTCAACAGATAACTTTTATTTT 94502 36 100.0 42 .................................... TTTCGTTGACTTATCGGACAATAATTATCCGTCGCTATAACT 94580 36 100.0 34 .................................... TATACTCCAGGTATTCATGATCTTTAAGCATCCA 94650 36 100.0 40 .................................... TTGAGTGAAAAAAGATGTTAATTTTACCGTTAACTGCTTC 94726 36 100.0 36 .................................... ATAACTAATGTTCTATCAAACGTATATTCAATTAAA 94798 36 100.0 42 .................................... TCTAACAGGAACTAAATCAAGGACGTATTTCCTACCACCCAA 94876 36 100.0 41 .................................... GTATATCCGCCGAAACTATAACGGGGTTAAGTTCTAATACC 94953 36 100.0 46 .................................... GATCTAATGTATTTCATGGTTGTCCTCTAATAGAATAAGTAATTAG 95035 36 100.0 35 .................................... CTAAGAATAGACTGAATATTGTTTTCATGTTTACA 95106 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 17 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : CAAAAGCACAGATAGTATATTTCCCTGGTCTAATCAAGTACATACCAACTTGTTTCCTGTTCCCTAAAACTAAAAAACCTTATACCTCAAGAACATGAACCAAAAAACCCTTAAAAATCAACAAACCCACAATACCTAGCCACCAAACCAGCTAAAACTTGCAAATCTATCGGTTTAGAAATATACTCATTAACACCAGCAGCCAAACAAATTTCTCGATCTTCCTTCATCGCCCTTGCAGTTTGAGCAATAATCCCTATATGCTGATATTTAGGGTTTTCTCGTAATTGCTGCACCAAAATTAAACCATTAATATCAGGTAAACTCACATCCATTAAAATCACTCTTGGTTCTATTTCCCGCAGACTATTCCACATTTCCACCCCATTTTTTACCCAAATTACCTGATACCCCAATCTTCTTAAATAAATCCCCATTAATTCCCCATTTGCTAAGTCATCTTCCACTAGTAAAACTACTGGTGATAAAGTCATATTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //