Array 1 51258-52443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTE01000018.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4353 NODE_18_length_82727_cov_3.99335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51258 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51319 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51380 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51441 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51502 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51563 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51624 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51685 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51746 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51807 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51868 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51929 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51990 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 52051 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52112 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52173 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52234 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52295 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52356 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52416 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69113-70728 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTE01000018.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4353 NODE_18_length_82727_cov_3.99335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69113 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69174 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69235 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69296 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69357 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69418 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69479 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69540 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69601 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69662 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69723 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69784 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69845 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69906 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69967 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 70028 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 70089 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70150 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70211 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70272 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70333 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70394 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70455 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70516 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70577 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70638 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70699 29 100.0 0 ............................. | A [70726] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //