Array 1 649810-649979 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073769.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 649810 28 92.9 44 ...T...............A........ TGCAAGGCTAATCTCTAGCGATGACCGCCAGAAATATTTCAACC 649882 28 100.0 42 ............................ CACTAGATAGCCGATTGATGCGGGGGATTGTGGCTTTCAACC 649952 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================ ================== 3 28 97.6 44 CACCCCTAGCCGGGATGGTTGTTGAAAC # Left flank : TAAGATATAATCAGAAACGCATGACAAGGGGGTATAGCTCAGTTGGTAGAGCGCTGCAATGGCATTGCAGAGGTCAGCGGTTCGAACCCGCTTACCTCCATTGTTGTAAATTCGCAAATTATATGTCGCAATTCGCAAATTAGTGTCGCGATTGGCACATTAATGTCGCTTTGGTGGTTTTTATGTAGGTAATTTAATTACACTAACTTTTCGCAAATTAATGTCGCAGACTGTCTTGATCTCAAGTCATAGAGCGACAAATTATTTGTCGCCCTAATAGCTAGATGTCGAATAACAGATTAATGTCGTTATTAACAAATTAGTGTCGTCTAAACAAACATAGTAAACGTTAACAAAATAATGTCGTCGAAAAGAAAGCATTATTATTTAAGCTCGTAGTGTTCAATTATTCTAAAGTTCTGAAATCAATGATGCCATTGTAGCGCTCCTTTCAACCCTCTCAGAAAAATTTGAAAGATTTGAATCTTCTATTATTAATA # Right flank : CTCGACCCGTCTAGAACCCTTGCTATAAAAGCTTTCCATACACATAATTTGGCAGGTCTGCTTAAAAAGTCTCGAACTGAAAATTAAAAAACTAAATGCATTGACATACTAGTTTCTTAAGTCAAGACTGGATAAGGGTTTTAAAGTTTTGGCGGGACTCCAGGGATTTTGCCCCCGCTTTGACACGCCAAAAAAATATTTGAGAGGGTTCCCCCGACCGACGAAGGGGGTGATTCAGTAGCCACCACTGTGGTAATCCACACCGTTATAAATAACGACTATGGCTAAAAGCCTTACTCCTTATTGCTGGGAGCGCACCTATCCTGTCTTGCGACAGCAGCATCAGAAGCGGGCAGCTACCAGGGTCAGAAAGCATGACGGTCTGACAACCGCCAAAAACTAACCCAGATTTTTCACAGTACAGCGGCTCCAAAGAGCATGAACTGCGGCGCTGTTATATCCATATTATATTTTCAAGGTTCAGATTAGTGAATTAAACT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCCCTAGCCGGGATGGTTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 26885-28429 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000163.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.15_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 26885 36 100.0 34 .................................... CCGAAGGTGGCATTTATCAGCCTCTTCGTTTACT 26955 36 100.0 36 .................................... CTTTAGATTAACGTGTAATACGCAGGAATCGGTCCG 27027 36 100.0 40 .................................... GATTTTTTGAAATCAAGGCAAACCCAACTCGAAGCTTAGA 27103 36 100.0 36 .................................... GCTATAATGGGTGCCATTTACATGCTCAACAATTGG 27175 36 100.0 34 .................................... CAGGTTAGAAGGCTGGGTGCCTTGATATAAACTA 27245 36 100.0 34 .................................... CCTAAGTCAAGTTTTTGCAAACAAGACTATCCTT 27315 36 100.0 32 .................................... TAGAAACTCTGAAACATCAACTTTCGAGGTTT 27383 36 100.0 37 .................................... TAGTCTTCGTAATTTTCTCTAACGAGAACAAGACGAG 27456 36 100.0 38 .................................... CTGTCAAGCTAGTGGGAGATACAATTAGATCTACCGCT 27530 36 100.0 39 .................................... GATTGCAACGAAAAAACCAACAATCCCAGCAGCGATTGA 27605 36 100.0 35 .................................... GCCTGGTCCCTTGCTTTAGAAACTTGCTCTCTAGT 27676 36 100.0 34 .................................... GCTATGTTTCCACAAGTCGCTTTGATCGTTTTGT 27746 36 100.0 36 .................................... ATTTGGCTGCCGGGCTGCGCCGTGGGTAGCCATTGA 27818 36 100.0 35 .................................... GGTGTTCTTGACACCCACCCCAAGCCACTAAAGGC 27889 36 100.0 35 .................................... ACTACACGAGCATTGTGTGCATCGTTGCTAGCGAC 27960 36 100.0 35 .................................... AATATCGAGCTTCGCTTGGTCAGCAGCGATTCTTA 28031 36 100.0 37 .................................... GTTTATGTTGATGACTTTGGTCACTGGCTGCGCTGCT 28104 36 100.0 37 .................................... GGCAATCTTCCGCTGAACCTGTTGTGCGTCATCGTTT 28177 36 100.0 34 .................................... GCTTAGGACTACGCTTAAGATGAGGCTTACGATC 28247 36 100.0 39 .................................... ATTCATTGGGAATGGTGAGGGCTACAAGATATACCAAAT 28322 36 100.0 35 .................................... AAAAAAGCCACGATGGAGACCAACGATAAAACCAA 28393 36 88.9 0 ............................A..TTT.. | A [28421] ========== ====== ====== ====== ==================================== ======================================== ================== 22 36 99.5 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ATAAAGATGTTAGTGCTTGTTGTATATGATATTCCTGATGACAAAAGACGCACTAAGTTATCCAACTTTCTAGAGGGCTATGGGCGAAGAGTACAATTTTCCGTGTTTGAGTGTTTTTTAAGTTTGGACGAAATGCGGCAACTGTTTGAGAAATCAAAAAAACTAGTTAAACCATCCGAGGACAATGTGCGATTTTACTGGATATCGGAAGAGGCTGTTTCCAGGGTGTTAACTATTGGTAGTGAGGAACCAGCAGCACCGCCAAAGTATTACGTTATATAGGTTTTAGGATAATTAAGGAGGTTTTGTAACATGGTCATCGACGCATCTCGTCAAATCGCTGAAACCCTATCTTTTTCGTTGAGATGCGTCGATTGCTTACAGGCTAAGGGTTTGAGGTATGTATTTTGCTTAATTTTGGAGAACATGTATAATGTTTTTCAGAGATGCGTCGATTTGATGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACA # Right flank : CAAAAAAATAAGCCCTGATATTTTTCAGAGCTTTTTTATTCCTAACAACATCGCTACAAATTATTTAAGCTATATTCAACTTTGTATACTTAGCGACTTGATATTGTATATCATCTAAAAAAATCACATCATCAGCTATTTCCGAAAGCTCTTGACTTAACATACCCTTCTTCGCAATAATAGTTACCTCTACACCACGTTGTTGTATTTCAGTAATGGCAGGAACAAAGTCACCATCACCACTCACAAGAATCACCCTATCTTGCTGCTTGACTTCCCTTAACATATCAACAGTAATTTTTACATCATCACCAACAGTTTTGACAGTATTGCTATCAATTCGAGGTAAAATCGGAAGTCCAATTACTTCATAACGCAAACCTTCTAAATAACTTACAAACCGCTTTTGTCCATCAGTCATCGGTGAATGAACACCAGTGTAATATTTAAAAGTGGTAGCATTTGCGCTTTGAGAAAGTTCTACCCGCAACGCATTATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 34904-38977 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000163.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.15_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 34904 36 100.0 34 .................................... TGTAGAACGGAGGGTCCTGTTGCCCCTCGTTTCG 34974 36 100.0 38 .................................... GTCACAGCGCAATTCATGCGATAATGGGTGCTATCTAG 35048 36 100.0 31 .................................... GTCAGAAAACATGGTCTGGTTTATTTCTTTA 35115 36 100.0 36 .................................... GTTTTGGGAATTGGATTGCGAGGTTTTAACAGTATT 35187 36 100.0 31 .................................... AAGTGCGTGATACACCGCAAATTATATCTTC 35254 36 100.0 37 .................................... AACTTTACTCCTGCCCAGTATTGCTGCTTAACTTCTG 35327 36 100.0 35 .................................... TTTTCAATCTCAACCTTCTGTTCACAAAGTGGACA 35398 36 100.0 39 .................................... CCGCAGCATGATCAAGGTTCGCCTGAGTCAACCATTCTT 35473 36 100.0 38 .................................... TTAGCAAAGGATGGTTGTCAGCTGCTGATGCATCTCGA 35547 36 100.0 31 .................................... AAGACAACACGCCCAAGGACCATAGGTAAAA 35614 36 100.0 39 .................................... TTGTTTCCGTCCCTCAAGCGCCATGCCCGGGCTAGAGGA 35689 36 100.0 36 .................................... AATTAGTACGCCGTCGTCTTTAGTCCAAACCATCGC 35761 36 100.0 37 .................................... ATTGCTGATGCAATTCTGAGATATGGATCACAGCCCC 35834 36 100.0 35 .................................... AAAACTGCATCTTCGATTGGCTTTACAGCGTCTGA 35905 36 100.0 37 .................................... CCGTGGAGAGTTAGGGGGATGGGGGGAATTTTTAACC 35978 36 100.0 40 .................................... TGTTTTTGCAAATCCTTTGGCAGCCTACGGTTATTTGACC 36054 36 100.0 37 .................................... TTTAAACTCAGACTAGCTCTTAATATCATATTAAGAG 36127 36 100.0 36 .................................... ATTAGGACCATTAGCGTGACATTCCTGCGCGCTCTG 36199 36 100.0 32 .................................... GTTACAGCGTCCTCCGTTTTGCTGAGGCGCTA 36267 36 100.0 39 .................................... CTTTGCGATAGGCACCGGTTGTTCTTTGGATTCATAATC 36342 36 100.0 34 .................................... TCGTCTGTGGGGTTTCCATCTGTATAGAGAACAA 36412 36 100.0 35 .................................... CGTATGATGCAATGCGTTGCTCTGGATCGTCACCA 36483 36 100.0 35 .................................... ATTTTCAGGGATTTCGACCTCAAATTGAGGTTCAA 36554 36 100.0 39 .................................... CTCGAAATCGAATCAGAGCAAATTTGGGGTAACCGTGAA 36629 36 100.0 31 .................................... TTAAAGTTACGAATATTCACACTTTGCCTGC 36696 36 100.0 39 .................................... CTTTAAGACCGCCAGAAATTGCAGATGCAAATTCAAAGT 36771 36 100.0 29 .................................... TTGCTCTCCAAATCTTGTCAGCCCCTCGA 36836 36 100.0 38 .................................... AATAAACAGTCACTTCCGTGACTGTTGTGGGGTCTATA 36910 36 100.0 30 .................................... AATCTTTCGAGCAATGAAGAAGAAAAACCT 36976 36 100.0 39 .................................... TTTCAATGGAGTTTCTGTCACCACAAATGGTTTGACTTC 37051 36 100.0 39 .................................... CTTTTTGGATTAGAGCGGGAAATGACCTGTTGGCTTACT 37126 36 100.0 38 .................................... GTTATTTGGCTGCACGAAACCATTTGGAGATTGATTTC 37200 36 100.0 35 .................................... ATTGTACCCAGATTCGCATGCTGAACTGGCAGAAG 37271 36 100.0 38 .................................... ATTGTACCCAGATTCGCATGCTGAACTGGCAGAAGCTT 37345 36 100.0 32 .................................... AATCAGAGGAGAGTTTGATAAAACCATTGAAG 37413 36 100.0 36 .................................... TATTCTGTTGATTTATGCCATTAAAATTTCCGCTTT 37485 36 100.0 36 .................................... TTGAATTTAGCGCAAATTCAACTTCAGAAGAGGAAA 37557 36 100.0 38 .................................... AAAAAGATTTACTTTAGACTGAGCGTTAAGTAAAACAC 37631 36 100.0 37 .................................... GGTGGAAGTACCTGTGGATTCCATTTTCAACATACCT 37704 36 100.0 36 .................................... ACGTAGAACGTGTGCAGACCATGGTGTAGTCCGCGG 37776 36 100.0 38 .................................... TCACAGGAAGTGTTGCTGATCCGTTACCAACTTAATGT 37850 36 100.0 38 .................................... GACTGAGGTTGCGGCTTGGTAAGAGCAGTCGGTTATTG 37924 36 100.0 36 .................................... ATTACGACGGATGGTTCTGGGTTGGACATATTGTCT 37996 36 100.0 32 .................................... TTTATTTCCAAGGGCGTAACGGCAGCTGTATC 38064 36 100.0 37 .................................... TTTCCACAGTTTGCACCTTGACGAGACGCAACTGCTA 38137 36 100.0 38 .................................... AAAAATTTGATCTTTGACAATGTGAAAGAATCCGACCC 38211 36 100.0 35 .................................... GGGAATGCTGTTATCAACGGCGACGTTGACAACTT 38282 36 100.0 35 .................................... TATACTTTGGGTCGCCTGGTTAGAATTGGCTCCCA 38353 36 100.0 36 .................................... CGAAATAAAGGCGAGAGAACTTTTTCTGAGCACGAT 38425 36 100.0 32 .................................... GTGGGGCGGGAGCTGGATGCTCCCTTGGAGGG 38493 36 100.0 41 .................................... CTCTTGTTGCAACGAGAGCGTGGCACTCGTGCGACAACTGC 38570 36 100.0 39 .................................... GTTTGTTGTGGTTCGACTTAATTGCTCATTATCTTGAGC 38645 36 100.0 38 .................................... CTCGATTGTTGGAGCAGGGCGGGAATTTCCTGGAACAA 38719 36 100.0 40 .................................... TACCCCTTCTCCCCGACAGGAGGAGGTGAAACTATTTACA 38795 36 100.0 37 .................................... CCTGAATTTTTTGGATTCCGAGCAAAACTCTTAAGCG 38868 36 100.0 37 .................................... GAGCTTGAAGGAGAATTGCCGATATTCTCATTACGAC 38941 36 94.4 0 ...............................C...A | A [38972] ========== ====== ====== ====== ==================================== ========================================= ================== 57 36 99.9 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GATTGGGAAATGCTTTCAGTTTTTGATGTTTAGAAAAACGCGCAGTTTATTTTTTCTTGCATCTTGCACCAATTTTTATTGGTGTAATTTATTTTTTGTATTCTTTAAGTAAAAAAACTTATATTTACATTAATTATTAATTCTTACTCCTCAAAGAGTTGGTGATTTTTGCATATAATATTCGTGGTGATAAAAGATGCACGCTTGTTATCCAACTTTCTAGAGGGCTATGGGCAAAGGCTGGAGGAACCAGCAGCACAGCCAAAGTATTACGTTATATAGGTTTTAGGATTATGAAGGAGGTTTTGTAACATGGTCATCGACACCACTCAGCAAATCGCTGAAATGCCTATTATTTCGTTGAGTGGTGTCGATTACTTACTGGGCAAGGGTTTGAGGTATGTGTTTGAGTCAATTTTTGGGAGAATGTACTATACTTTTAGCAGTGGTGTCGATTTGGTGGCTGAAATCCTTACTGGGCAAAGGCTCCTAGACGAACT # Right flank : AAAGCCCTCTACAAATTCGAGGGCTTTTTTATTACTAACAAAATGTGATATTTAGCGATTATTTTGCCAGTGCTGACGATTATTTTTAGAGATGCGAACAACTTGATATTTTAATTAATGTTTTACTTAAATATCAAGTTTGCTTAATTACTTATCATTAGCAGAATCGGAATCTTGTTCTTCTTGAAAATCAGATTTTGCGGAATTGTATATTTCCCTGATAAAATCCTTATCTTTCGTCACTTGCTTTGTTGCAACTTTTAAGTTTTTTTCATTAATGGGCGCATCTGAAGAAACAAGAAACATGATTACTTTCAAGTAAGTCCAACCCATAACAGTCGAAAGAGCATAGAACGTAGTACCTGTTATTGCCATTCCTCCAGCTGTTCCTAAACCGGGCACTATTTTTAAAATAGAACCTCCGACTGAACTTAATATCATTCCAGGAATGATTGACAAGATATTTGTTCCTATTGCTGATGCAACTGATTTTAAAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 49304-48537 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000163.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.15_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 49303 37 100.0 36 ..................................... ATAGATGTTTAGTTAGTCCTGTTAACTTAGGGATGT 49230 37 100.0 35 ..................................... ATTCAATAAAAACCCGATTTGCCGCTTCAAAGGGA 49158 37 100.0 35 ..................................... ATTGAGACTGAGTTTCTTCAATAGGTTGTCCAACT 49086 37 100.0 37 ..................................... CTATTCCAGATATTCTTGTTCCTGATGCGATCGCTTG 49012 37 100.0 35 ..................................... AATCTATCAACAACTCTATATACTTTCTTTTGAAG 48940 37 100.0 37 ..................................... TCTTCTGCCGATATAAAATAAATCAAATCGCCGTCAG 48866 37 100.0 36 ..................................... CAATTCATCCAGGTTTGCAGAAGCTTCCTCAAAACT 48793 37 100.0 36 ..................................... ACTGTTCACATCTGTAAAGCGAATCTTCTTCTTCAA 48720 37 100.0 35 ..................................... ACGTTGCGCTTGGAAGAGATTTTTCGCAATTTCTG 48648 37 100.0 38 ..................................... ACCCAGGTGTGTTTTTGCAGACTCCAGGCGACATTCGT 48573 37 97.3 0 ....A................................ | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.8 36 CTCGCGCCGACTGCGTTAAGTCGGATTAGTTGGAAAC # Left flank : TTGTTGCATAAATGGAAGATAGGAAAAACCTCTCCCTCTCCCAGCCGTGAGGCTGTAATCTTTGTATTAAAATTTATCCTTGCTCTATTCAAAAGCGCGATTTTATGCATGAAGTACTTATTATGTCGGCATAGCAGCGTCGGTGAATGTGAAAGCGATTTCTAGCATTCAGTTATTGTAAAATGGGACTACAATGTGCAGATGCGATCGCCTCCAATGGTAATAATTATTTAGGGAAAAACCATAAAAACATCGACAAAGACAAGCGATCGCAGTAATATTTTGTTATCAGCTTGATGTTTGGCAGAGCGAAGCGGGGGCTAAAAGCTGGGGGGTTCTGCCAAAATCGCCAGAATCTAGACAGGGAAATGGTTACAGCCGTTGAATGTTGGAGGTAAATAGTAATTTATGTCAATAAGCGCGGCTGAAATCGACCTGTTTTTGAGGTCTGCCAAAATCTGTTCTGGAGTACTTGCTCTGCAAGGGTTTCAGGGGACGGA # Right flank : ACAACATATCCCCGACTTTTTCAAAAAGTCGGGGATATTAGAATTAGGGAGAAAAAATTAGTCAAAGTAAAAATCTAATAATTACTAAGGATTATTATTTACTTCCGGCTCCAAACCATAGCGACGTAAAATCAATTTACCCTGAGAAATAGTATTACTTACTCGCGTATCTTGAGTTACCCGAAAATGGTCAATATTTCCCTTATTCACATATCTGTCATACTGTATTCCTCCATGTTGCCTCAGAATAGCAGTATCACCATTAGACTCATCCAATAAACGTGTAACCGTGGCTAAAGTTTCTTGTAATTTGACTCGTTTATGCTTTTCTTTAACTCTATTGTAGTCAGCCCTAAAAGTATCTTGATATTCTAATCTAGAGAAAGGAATTAAATCACCGCAAAGTAAATCATCTTTACACTGATTCCAAATTAACTGTCCCCAGGTTGAAAGGGTCATTTTCCCATAAGCTTCTCCTAACATCGTTTCGGGAATTCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGCCGACTGCGTTAAGTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 140775-140092 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000002.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 140774 35 100.0 35 ................................... TTTCCACTGGTCCAACAGGCAAGCTGTCTTTCCAA 140704 35 100.0 35 ................................... TTTCTGATTCAGCACTTGTTTTTGCATTAGCTATT 140634 35 100.0 37 ................................... TCGTTAAACGGATAATATCCTGATTTTTCATCAAGAC 140562 35 100.0 38 ................................... AATACTCTGGCACGCCGACGCGTTTGCCGTTGTAGTTT 140489 35 100.0 36 ................................... TGAGAACCACCGCCATTTTTGCCTGTTCCGTCATAG 140418 35 100.0 34 ................................... TAAATCCTCTATTCGTAGGGGTTGCATACTCTAA 140349 35 100.0 40 ................................... CAGTAGGATTCTGTCGTAAATCTTCCTTCAATGTATTAAT 140274 35 100.0 35 ................................... CATCGTAATGATTGTCATAGCATTCTACTATTTTT 140204 35 100.0 43 ................................... TACCATTCACAAAACACTGGACACCTTGCGCGGAAAGTGCATC 140126 35 88.6 0 ............................CAA...A | ========== ====== ====== ====== =================================== =========================================== ================== 10 35 98.9 37 GTTTTCAACCAATTACCCCTCACGGGGATGGAAAC # Left flank : TGAAATAGCCACAAAATGGGCGACAATATTAGCACGGCGAGAAATGGGAGAATCGTTGCAAGTGGTAGCGCAAGATTTGGGAATGCCTTATGAAACAGTGAAAACTTATGTTAAATTAGCGCGACGGGCGCTCAAAAATCAGGAGTAGTTTGCTATACTCATCGAATGTGTAGCGGAACCTCGAAAAGTTAATATTGCGTTTCCGAATAAAGGTGAAAGTGTTTGTTTTTACTTTTTACATGCAAGTTTTTAGTGGGGAGTAGAGCGATCTTATATTTACTTTATATTTCCGCTCGCTTAATAATCACCTGAGGGGGAAGGGTAACACCTGAAACCCTTATTCTTTCGTTGACCCCCTCAGATAACTTGCTGTGTAAATGTTAAAAGCTTGTCAGGTTAAAGGTAATTGATAAATAGTCTCAATTATTTGCTTATGACAAACACCCCCTCAGATTTACATCCCTCAAACCTTGTTATTTCAAGGTTTCTAGTCAGGTAGG # Right flank : GACGCCTTTCAAGGATATTATGATCGTCAAACACTATAAACTAACTTATGGATTGGCTACCCTCAATTGACTTATCTCACCTTTGGGATTTGGTTATTGCCCAAACTCCAACACCTACCCGTACATCTTCACCGTTACCAAATACGGCAAAAATTTCTAATGATATCGAACTATTAAAAAGTCAAATAGAGCTTCTTAAAACTACAAATGCCAGCCAACTAGAATTTCTCAAAAGTACAAACATCCAACTAAATGAAAACTTTAATAGATTTGTTGCAGCGATGCAATTTGTCTTAGTTGTATTTGCCTTTTTGGGTGGACTTTTAGCTTATGTTGTAGGTAAAAATTTAGATGATGCGAAGAAAGTAGCCAGTCAATTAATTAACCGAGAAGTAGAGAATAAAATTACAGATTTAGTTCAATCCGAAGTTGAGAGTGTCAAGCGTTCTTTGCAGCGTGAAAGGGTAATTGGTTCAACAATTGTAGATTATTATTTACCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAACCAATTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 143312-142696 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000002.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 143311 35 100.0 42 ................................... GATTATTCCAATCGTGCAGCACGTGAACACCACCAACTGAAA 143234 35 100.0 39 ................................... AACTGGCTATTGCTGGTTTGATGGCGTTGAATGGCGTTG 143160 35 100.0 36 ................................... GGGTGGCATTCTCCCCAATTGCCTGTGCCGTACTGT 143089 35 100.0 38 ................................... TGGTAAGATTTGGCGAGCAGAATGGACATTTCAAGAAA 143016 35 100.0 36 ................................... TGATGAGGACACAAAACGCCTCGTTATAAGAATGGT 142945 35 100.0 39 ................................... TTTCAGCTTCATCTGTATTTGCAAATGAGTGTGGAAATT 142871 35 100.0 37 ................................... AACTGGAGACATAGTTGAGAAAGGACACGTCAACGGG 142799 35 100.0 34 ................................... TTATTGCCATGTTCACCACTGTAAACATGGCTAA 142730 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 9 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAGAGATTTAAAAC # Left flank : AAGAGGTTCTACACTGGTTACACCTCAATAATTTAGAGAATTCACTTAGTTAAATCACAACTAAGTCAATTTGTCAATATCACCTCGACCTGTTTTGAATAATATTCCTCAACTAAGGTGATAGTAGTCAATTTAAAAGCTGATTTTTCAGGTATTTATCAGCATTTGTGAGGTGGTAATTATGACCTATTTTAAGCAACTGCATCCGTGGTGCATTATTCGTGTTTTACCTAATAAACAACAGTTGGATAATTCTGGTGTGCCGTTACACCCCAGAAGCATTTATACAGAGTGCCAAGAGTCTAAAGTTGTTGCACGATTTCGTCGCCGAGATGATGCAGTTGCTTACTTGCAAGTGTTGCAACATTCAATCAAAAATACAAGTTTTCTGATTATTTTTGATGTGCAAGGAGTGCGAAAATTACCTGATAGTAAAAAGTAAAAAGATAATCTCCATAAATAAATAGAAGTTTTAAAAATTTAGCGCAATAAATATACTG # Right flank : CCCACTCTTACAGAAAGCTTACCAAATAAGGATTACAGAACTGTAAAACTGAGGGGGGTCTATTTTACCTGTCAACAGACCATAATTATTGACAATAACTACAGTCTTCAAGACCCCAAACCCTTATACAGTAAGTCATCTGAGGGGGTCTACGAAACAATAAGCCTTTCGGACTTTGGACGACCCCCTCAGTTTACATTTCTTAACAAAATGGCTTTAGGAAACTAACCATTAAGTTACACATTAAAGAAAATGTAGTTATTAAATTGTCAAGGTGCATGTGTTGGTATAAACAGTACCATAGCAACCGACAAAATGCAATCTCTCTATTAAGGTTTCCAAATCGACTCTTATAGAGACGCGATAAATCGTCGTCTCTACATCTGACTTATTAAATCCCCATAAGGGGATGAAAACTTGATAAGATGCAGAAAATATAGCTTAAATGCTACCATGCCTCGACACTCTCAAAAAAAGCTAACTACATCATCTTCTGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAGAGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 147116-147297 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000002.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 147116 35 100.0 39 ................................... TTATGTAGTCCAAGCTTCTCTGGAGCGTGGAAACATTAA 147190 35 100.0 38 ................................... ATCTGCTATTGGTTTCTTCTTTTAATGTTTCCAAAATT 147263 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 3 35 100.0 39 GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Left flank : AGTGGTAGCAGTGCTGGATTATTGAGAAACAAGGTAGAATTTTCTTCCCACAAGCGTACAACTCGGTAACGGTGAGTTGTTATTTCATCAATATACTCTTGAGTGAAAGCAATTTCGTCACGTGTTTCCTGCAAAAATATAACAACCTGTGTAATTGGAAACTTATACTTACGTCTCAATCTCACGGAGTAATCCAGCATTCTAAAGGGTAGCGGGGGTTTCGAGATAGTACGGGTCTGGAATTCGATGTGTAAAATTCTCTCTTGAGTTTGCACAAAGGTAACGGAATCTGCGCGGATTGGTTCTAAAGAAAGTTCCGTTTTAAGTATTTTAGCTTCTGTGGTTTGAGATGTTAATAACCAACGAGCAAATTCGAGTGGATATTCTTCTGCTAACAGCTTACAAATGTTGTCCGTGTTCAATTTTTACACCCTGAAATGAGGCTATTTTTGTGACGAGTGTAAATACTTTATCATCATTGGCAAATGCGATCGCCACCC # Right flank : CCCTTAGTAAAATCAAAGAACTGGTAATCGCGCGCGAGTAGCAATGGAACAGGAATGTACGCTAAGGCTACAAGCTTTGTCTACACAAGTTTCTAGCTATAGGATTCGCCAAAGTCCTTTGGATCGCGCAGAGGACGAAGTTCACCCCGCTTCAAATGTTCAGCTAAAGCAAACTGATAACGTCCTAACATATTGATATGCTTGTATCCCAAAGGAGAGAGCCGCGCCAAATCCTCAGATTTTACTTCCACCCCCTGGTCTTGCAGTTGCTTTACCGCTACATCTATGTAGTTCGTATTCCATAGTACCAGTGCATTCACTACCAGTCCCAGAGCGCCCAGTTGGTCTTCTTGACCTTCACGATAGCGTTGACGCACTTCACCCCGTTGTCCGTGGAAAGTTACCCTGGCTAAACTATGGCGACCTTCTCCTCGGTTAAGTTGGGTAAGGACGCGACGGCGATAGGTTTCGTCATCAATATAAGGTAGCAAATATAACGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 150598-150926 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000002.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 150598 35 100.0 36 ................................... CGACAACTATACGGATGCCCAAGATGCTTGGTGCTA 150669 35 100.0 38 ................................... GTATTTGCAAATGAGTGTGGAAATTTCACGCAAAATGC 150742 35 100.0 44 ................................... CTTTCAGCCTTGACCAAATTATTGAGCAACAAGGACTGCGAATT 150821 35 100.0 36 ................................... CTTTTTCACCTTGGTCTCATTGAAGAATGGAATCAA 150892 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 5 35 100.0 39 GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Left flank : CTGGATATAAATATGGACCTCTGTTCCGAGCCTTTAAGAATTTTAGGGGTGGTTCTCTACGTTACCAATCAGTTCAACAGAAGTGGTCTAGTTATTGTAAAAAAGCTGGTATAACCTGTAGTATTCATGACCTAAGACACGCACACGCAACTGAACTTATCAACAATGGGGTAAGCCTAAATACTATCCGCAAGCGTCTTGGTCACAAAAACTTGCAAACTACTATTTATATCAAAATCGGTGGCGTTTTCAGCCTCGGCGCAAGCGTCTTGGTCACAAAAACTTGCAAACTACCCTCCGTTACGCAGAACAGTCAGATGCTACTGCTGACGCAGAACTGCGGGCTTGGCGACGACACCATGAACAAGGTTATCAGTAGCGATCGCAGTAGCGCGTGATTGCTCCCGATTGCCGTTGTCTAGAGTCTAGTGATAGTAAGCTTTTCGGGCTTAACGTACATTCCTGTTCCATTGCTACTCGCGCGCGGTAATTTGTGCAAA # Right flank : CCCTACCTTTCTGAAAGCTTTACCACAAGAGTGTTTTAAGGGTGCAAATCTGAGGGGGGTGTATTTTACCTGTCAATAATCTACAACTATTGACATAAAGCAACATACTGAGCCACTTCAAATCCTTACAAGGTAAACGTTCTGAGGGGGTCAACGTAATAATAAGGGTTTCAGCGATTGGGCTACCCCCTCAGATCAACTTTCTTCACAAAAGAATTTTGGAAAAATTACGCCTTATATGAATCTTGACGATCAACAGGCTTAATTTGGAACTGCATATTTATGAAATTGTCAAGGTACAGCAGCGATGTACAAAATATACCACATAAATTTCACAAAGCGCAATCCTTAAGTTTCTGTTTGCGTATCAAATTCAAAATTATCTTTCTTTTGCCTTTTGACTTTTGCCTTTTAACTTTTAACTTTTTACTTCCTTCCATAGCTAAAGTTTCCAAATCATTGGTCTATATAACTCCACCTCTCCCATCAAACAAGCGACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 156501-155390 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWD01000002.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 156500 35 82.9 36 T...G.G.AAG........................ GAGAACTAACAAGTAGATAGCTAACTGTTGCGAATA 156429 35 100.0 36 ................................... CAGTTGTCGGTTCTACTAACCAGACACAACAAACAG 156358 35 100.0 38 ................................... CTAAGGGATATAGGTGGGAAAACCCCATATCGCACATG 156285 35 100.0 39 ................................... TCCTAATCTTACAAAAGGTGGACTACGAGAAGCAGCTAT 156211 35 100.0 33 ................................... TTTTTTTTTTATGGCTCTTAAAAGATTTATAAT 156143 35 100.0 40 ................................... ACTACGATATCAGTATCAAGGCAATGCGCTCTTCTAAGCG 156068 35 100.0 38 ................................... TCAGTAGTATCTTTCATATTTGCACCATTATGTGCATC 155995 35 100.0 36 ................................... ACAAGTTCCAAGAACAGCCTCCGCACAGGGACTCAA 155924 35 100.0 36 ................................... TAATAACTAGAGACAGATTTCCTACACAAGTAACTT 155853 35 100.0 40 ................................... CTCTGAAAGTTACCGTATCCGCTGCGTTTATTGCTCAAGT 155778 35 100.0 37 ................................... TCAGCGGAATTGTGCAGCCACACCCTGGCGATGTAGC 155706 35 100.0 36 ................................... GAGAATACCAAATCACGGGATTTGGCACAACTGAAG 155635 35 100.0 37 ................................... CAATTTGCTGAGAGAATTGTGCGAATTGACTCTGGAG 155563 35 100.0 33 ................................... CTGCACCTTCTGCTTTCAGCCTACACCGCAAAA 155495 35 100.0 36 ................................... CTATCGGTGTCCCAACTGAATTCAGGGTACAAGAAT 155424 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 16 35 98.9 37 GTTTCCATCCCCGTGAGGGGAAGAGAAATTGAAAC # Left flank : TAGCGTCCTTGCTCTCGATAAACTTCTGCAATATTTTCGAGATTAGTTGCAATCTCTGAATGCTCTTTACCCAGATAATGTTTCCAAATATTCAAAGCTGCGAAAAAGTTACTTTCCGCTTCTAAGTAACGTCCTTGTGAGACATAAAATGCTGCAAGATTGTTTAAACTTTGTGCAACATCGGGATGTGAGCCAAACAAGCGTTTTCTCATATTTAAGACTTCGATATACAAGGGTTTTGCTAACAAAAAACGTCCTTGCATTCGATATAATTCTGCTAAGTTATTTAAGCTATCTGCTAGAGCAGAGTGTTCTTGAATATTTTCTCGTCCTAGCTTTATCGCTTGTTGTGTAACGATTACAGCTTGCTCAAAATTCCCTTGCTCAACAAGTTGCACTACTTCTCGGTTGAGTTGATTTAATTTTTCTATTATTTCTTTCATCTGCTGATTTGAGATGCTTATATATTTTTTGGTTCTTAGTTGTTATTTTATGCAAAA # Right flank : CCTACCCTTTTGAAACCCTTTTCAGAAGAGACTTTTAGACGCCTAAATCTGAGGGGGTAATCTAGATAGGCAAATAGTTGATAATAAGTCTCAATAAAACTTAGAACAACCACCCTCAAACACTTGTGGAACAAATCATCTGAGGGGGTCAACGAAAGAATAAGGGTTACAGCCATCGGGATACCCCCTCAGAAAATTTAAGTATCCAAGGGAAGAATGAGTACTTTTACTCTCAATTAAAAACTTGAGATTCAATTTTCAAGGTTCTGTAATTATAAACAGTAGTATAACAAAGTACTTGAAATTTGGAAAGCCTGAAATATTAACTTTTCACCAAACAAGGCAAAAGGTAAAAGAAAAAATGGTTTGAGAGCAACTAAATTTACTTATGGAAAGAAATAAAAAGATTTGTTTCTAGACAAGCAGTCCACTCGTACAAGGTGTCCTTATTAAATCCCCGCTCCTGCAATTTATCGGGATTATCTTTTGACTTTTGACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 668660-668033 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073768.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 668659 36 97.2 37 ..G................................. AGCATCGCACACTCAGAGTAGAAGTTGATGGGTTCTA 668586 36 100.0 35 .................................... TAGATGGTGTCGCCATAGCTGAAAACCACTCTTGT 668515 36 97.2 45 ....G............................... TTAATGGTTTCGGTGGCTGGATGAAAGGTGGCAAGAGTGTCACCA 668434 36 100.0 35 .................................... TTCTCAATCACTTCACCTGTGAACTTATCTACTGC 668363 36 100.0 34 .................................... ACAGGAGCAAACAAAGGTAGTGGTGTGGACATCA 668293 36 100.0 44 .................................... GGTTGTGTTTTCAACCCTTTGCTTGGCGATCGCTAACTCTGAGC 668213 36 100.0 34 .................................... CTCCTGTGTTTTCTCCTACGGGAATTTGGGCAGA 668143 36 100.0 39 .................................... ACCGGAACTACCTTGCACTGTGGGTCGGTGCTAGTGGGG 668068 36 94.4 0 ..............................AA.... | ========== ====== ====== ====== ==================================== ============================================= ================== 9 36 98.8 38 GTCACTTTTCTTCGGAGAAGTGGAATTAATGGAAAC # Left flank : TTGGGTTGACGTAACCAAACCCAACCTACACCGAATGCAGGATTTTAGCCAATACGCGCTACTACGAAACTACTAGAAGAGTTGAAACCTATGCTGGTTATACTTGTGTGTACACACAAGTCGAATTACCCCCCTTAATCCCCCCGATGGATTGGGGGGAAATTAGAAAATCTAGTTCCCTCACGCCACTTGCTACAACGGAGGGAACCTCCGCAACGCAGTGGCTCCCCTTTCCAAGGGGAGGGTTAGGGTGGGGTAATTCGAGAACTGGTAGTGATTCGATAACTTGTGTGTACACCGTAGTACTCCTCCACACCCTCGCGACGGGGTAAGCAATGTGCTTCAAACTCCTAATAGTTCGTTGACCCCGCCGATATCTTGTTGTATATAGGTTTCAGACGTTTTATACAACCCCAAGATGTCATTTCAGCCAACTGGTGATAAACCCCGTCGCAAATCGGGTCTTGACATTCGGTGGAGTAGGGGTTTCAATTAGAGGG # Right flank : ACAAAAAAGGGGCAGAATATTCTGCCCCTTTTTCATTTCTCAACTCAAATAATCGTCGAACCGGGAATCTCAATTACAGGTGGTTCACCCCAAGTTTCAATCTGATTTAAAGTATGCTTCGTTATCGGATAAAACCGTACCTTATCTTCACATTCATGACGTACAGAATATTGAATTAACCGCAGATGAAGATAGATAAACGCCGATGGACGCAGATAAATTTGTACCTCAGTTCCTCATTCGCTTTTCAGGACTCGACACACCCAGACATTAAACATAGGATAGAAAGTAAAGCAAATTCAATAAAATATTCCTCTTAAATTTCTGCCTTTCATATTCCGATGTCTGCATCAAATATCTGCCACTTTCTCATCGGTGTTCCCGGTAGCGGTAAATCAACCTTCGCAACTGCACTCTGCAAACTCGGTAACTATGTCATCGTCTCTACCGACGAAATTCGCGCTGCACTCTACGGTGATGCTGCCATTCAAGGCAATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTTTCTTCGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 2448577-2448030 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073768.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2448576 37 100.0 36 ..................................... GAGCTAATGCAGTAAAAGGAAAGAAAAAAATCAATA 2448503 37 100.0 31 ..................................... CGGGACGCTAAAGCACCCCTATGGGTTCAAA 2448435 37 100.0 35 ..................................... ATATTAAGAGCATAAGAAACACCAAGGAACCATAC 2448363 37 100.0 38 ..................................... GGTTTCGGGGGTGGCTAGTGCGCGAAGGGTAAAGGAGT 2448288 37 100.0 44 ..................................... ACAACAACAGCAGATTTTGGACCGCATACTTGACCCAATGCGGG 2448207 37 100.0 32 ..................................... TATTGTGAGTGCTGGTTATTGCCCAGATAACG 2448138 37 100.0 35 ..................................... CTCGCTCTGGCTTCGGTTCTGGTTCCGGTTGCAGT 2448066 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 8 37 100.0 36 GTTGAAATTTACCTTAATCCCTATTAGGGATTGAAAC # Left flank : CACCGTGGTTAGCTCTGAGCAACCACGGTTTTTTAATTTGTGTGACCAATTAAGAAGAAACTTCCAGCTTGTAATGCTCGCATATTGATTATTTAGTTGAAAGCTATCATGGCTATAGTTTACATCGATTCAATATGCTAAACTGCGATCGCCTTTGAATAACTTGATTAAGCCTGATACCGATAGCATCCGTTTTTACTTTATGTGCGCCTGCTGTTTTGGTCAAGTTGAACGCATCGGTGGTGAACAACCCTGTGATGAAACGATTTTCTTTGCGCGGATGGGTAGGTGTAGAAAAAGAGGTTTTGATGAAAATGCCTGAATCCCTTGCAACACAAGGCTTTGCGCTTATATTTACTTGCTACCTACCCGCGCACCTTACACAGTAAAGGTTTCAGGCTTTTTGACTTTGTGCGATCGCGCCAGATTGTGTTATGATTTACCCATCCGCGCAACCGAACCTTGAAAACCTCATACTGACTCACTTTCAGCTTCCCGCC # Right flank : TTTTGGGGATGACCAATAGACATCTCCGAAAAATACTAATACCTTTCTATGACTGGCTTTCAACGGGCGATCGCCAATTGCAAATATCAGCCACTCTCAACGCTAAAATCAGGGTTTGAGACAGTTTATGTCGATAATAAGGCAAAAGTAAGTACCTATGTGCGCTAATCATAAGCAGGAAAAATAGCAGTATTTTATATTCAAAATACTAAGGTTCCTATTCGGAATCTTACAAGTCCACATATCGTCATGATTATTTTTTCATATTTACTTGGATTTAATCTAAATCTTTCCGAAGCGACTCTAAATATCTTAATCATACGAATTAAATGTTCGACAAATATTCTTTCAGAGGCTAGTTCTTTATTTTTCAATTTTTGTGACAATGTCAATTCTCCTTTTTTTGGTTTTTGGTCGGAACTTTAATTGATGGTTCTCCTTCATAACCTTTATCTCCTTGAAATTTTTGATTTTTATTAAAGCTTTTTTTCCTTGCCTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTACCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 3444956-3447360 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073768.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3444956 37 100.0 33 ..................................... TTTAGCTGAAGTCTGGGAGCATCAATCTTTGAA 3445026 37 100.0 35 ..................................... GGTGAGCTTGATGACATGAACTCTATTATCTCTGC 3445098 37 100.0 35 ..................................... ATCTTACAGAAGCTTAAGAACTCTAGACTTATAAG 3445170 37 100.0 35 ..................................... ATGAATAACCCTGTTACTAAAGGAGTGAAAGCGGT 3445242 37 100.0 35 ..................................... ATTTGTTTGATGTAAGATTCATACTGCTGCTGATT 3445314 37 100.0 34 ..................................... AGTAAGAAAACTTGGTAAAAGAAAGAACCAAAAG 3445385 37 100.0 33 ..................................... AGCAAGATTACTAAAACTCAACCCGCACAAGGT 3445455 37 100.0 35 ..................................... TTCATAAAAGAAGGTTCGGGAGCTTTTATCCAAAG 3445527 37 100.0 33 ..................................... AATGCACCTTTATCTGGCAACGCGGGTAATTTA 3445597 37 100.0 36 ..................................... GCTCTTGCCCACACAGCACTTACCACAAAGTTTTGC 3445670 37 100.0 35 ..................................... TGGGCGGTCGGCTTTGTTATATCGAGAATTGTTGT 3445742 37 100.0 34 ..................................... CCGGGGTAAGGTTATAATTCCCATTACAGGGAAT 3445813 37 100.0 39 ..................................... GGGCAACCATCGGAATTAGAAGAATTATCAGAAGGCAAT 3445889 37 100.0 31 ..................................... ACCCAGCACGCACTAGCCACCCCCGAAACTG 3445957 37 100.0 37 ..................................... TTTTACGTTGATATGGAACAAGAAAATGTACTTGATA 3446031 37 100.0 34 ..................................... ATTTTGTTGGACATTTGGGCAACAAGACATTTTA 3446102 37 100.0 33 ..................................... ATATTGACGGAACTCTTACCACTACTATTTCTG 3446172 37 100.0 35 ..................................... ACGTAAATTATCAAAGCTTGCTTGTCGTTCTGCCT 3446244 37 100.0 39 ..................................... AGTGATAAAAGTTTCGGGAGTGCCAAAAAGCTGCTGGAG 3446320 37 100.0 34 ..................................... CATTTGGGAAACATCACTACCGCTTGCATAATTT 3446391 37 100.0 34 ..................................... TTATTTGCTACAAGGATTAGACACGGATAAAGAA 3446462 37 100.0 36 ..................................... ATATTTACCTGTTTGAATAATATTTAAAAGATATAT 3446535 37 100.0 35 ..................................... CGAAGTCTGCTAGTTCGGTTTCCCATTCTTTGAGA 3446607 37 100.0 33 ..................................... AGATCGGTTGTGGGACTTTGGGCGTCGAGTATT 3446677 37 100.0 32 ..................................... TTGCAAAAGCGACTTACCCCACTACTAGAGAC 3446746 37 100.0 36 ..................................... ATGAGGTTTCTAAGGTTCATAGATGCCTACTGGAAT 3446819 37 100.0 38 ..................................... CAGACTGGTTTTCCGTAACACCAACCATGAGAAAGTCC 3446894 37 100.0 36 ..................................... TGCAATAAGATTTGTTGCAGAGATAAATGCAGGTAT 3446967 37 100.0 34 ..................................... AAGGGTTCGGAGTACCGAAGTTCCGGAGTACCGG 3447038 37 100.0 33 ..................................... ATAAAGACTGATTATTATCCGGATAATCCTGGA 3447108 37 100.0 35 ..................................... AGTCTCCCAACAGGTATTACACTGCGGGATGCCTG 3447180 37 100.0 36 ..................................... GGAAAAGAAGTGGTGCCGGTGCCTCCTTGATTCACG 3447253 37 100.0 34 ..................................... TCCCTTGTGATTTTTTTTCCTTCTCCCTGCATAA 3447324 37 97.3 0 ................C.................... | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 99.9 35 GTTGAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AATGCCATTGCATCGCGATCCAATGCGATTGCATCGGGTGACAATGCGATTGTATCGGGTGACAATGCGATTGGATCGCGATCCAATGCGATTGGATCGCGATCCAATGCGATTGCATCGGGTGACAATGCCATTGCATCGCGATCCAATGCGATTGCATCGGGTGACAATGCGATTGTATCGGGTGACAATGCGATTGTATCGGGTGACAATGCCATTGCAGGGTGTTGCCAAATTTAATTTGCGACCAATTTAAGCAATATTGTATTTAGTGCGCGGATGGGTAGGTGTAGAAAAAGAGGTTTTAATAAAAATGCCTGAATCGCGCTCATTACAAGGCTTTGCGGTTCTATTTACTCGCCACCTACCCGCGCACCTTACACAGTAAAGGTTTCAGCTTTTTTAAAATGAGTGCGATCGCGCCAGATTGTGTTATGATTTACCCATCCGCGCAACCGAACCTTGAAAACCTCATACTGACTCACTTTGAGCTTCCCGCA # Right flank : CCCCACAGTCGTCTCGGCATTTGATATACATTTGAAGGGGCGATGTCTTCTGACGCGCCGCGATGCACTAAGCTTGTGACGAAGGATGACAACAACGCTGCTAAACAATCGCTATCAAGTAATCGAGGTACTCGGTGCCGGTGGGTTTGGTGAAACCTTTCTGGCAGAAGATACCCATATGCCTTCTCGCCGTCGCTGTGCGATTAAGCAACTCAAACCGATCGCCGCAAACGATCCGCAAACTTACAAACTGATTCGACAGCGGTTTGAACGAGAAGCGGCGACTTTAGAACATCTTGGCAAAAGTAGTGACCAAATTCCCGAACTTTACGCCTACTTTCCTGAGAATGGGCAGTTTTATTTGGTTCAAGAATGGATTCACGGTCAAACCCTGACACAGTTTGTCGCAGCTAAAGGATTACTCAACGAAACAACTGTACGAGAAATTCTTTTGCGTCTGCTGTCAGTTTTGGATTACGTCCATAGCAAAGGCATTATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 4211949-4212338 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073768.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 4211949 35 100.0 36 ................................... ATTTGGGGGTTGCTTCAACATTATCTTCTTTTTTAG 4212020 35 100.0 35 ................................... AAGTGAATTCAGTCCTGCTCTTTCTACCAAAACGT 4212090 35 100.0 36 ................................... GTTTGAGCGGTAGCAGCAGATATACAGAAAATCAAA 4212161 35 100.0 36 ................................... ATTGGATATGCTGGTTCCAGCATGGTATGAATTTGA 4212232 35 100.0 37 ................................... CTCATCAAAACAACGATTAGGATACCAGCGTAAAGGA 4212304 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 100.0 36 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GTCGGGTTAGCATTTCAAATTCCCGTGATTCAACTGTTGCTAGGTGCTTTAGGAATTATTTCTTCTCAAAAAATGCTTTCTGGTTGGCGTTATGTAATTATTGGATCGGTGGTTTTAGGAGCTATTCTCACACCTTCTACAGATCCCTTTACCCAAAGTCTTTTAGCCGGTGCTGTCTTGGGACTTTATTTCGGTGGTATCGGTTTGGTTAAGCTTGTTGGGAAATAATAAATATCATGACAGACTGATCGCACATACTGTAGAGACGTTCCGGTGGAACGTCTCTACGAATGTAAAGAAATGTAAATTTGCGGGGGGTAGGCGATCGCTGAAATGCTTATTCTATCGTTACCCCCCGCGAATCGCTTTCTGGATAAGGGTTTGAGATATTTTTTCGGTGGCTTTTTCTCAATAAACTAGGGTTGTTGACAGGTCATCTTGACCCCCCGCGAATTTGGCTATATATAATTAGGACAGGGTAAGGCTTTCAGAAGCCAAGC # Right flank : CCTGCTTCGTCTTGTTTCCAGTCTTTTTCAGTCCACTCCTTTAAATTATTTTATTAAAGAAAAAGTATTTAATGAAGCTATCAATTTAGGAAAGATAGTTTAGTTTATCTGATTCATATTCGAGATTGGATTAATAGAATTAAACAATATAGCATTTCCCAATAAGAGTGAAGTACACCCTTAAAACCTCACCCCCAACCCCTCTCCTTAGTAAGGAGAGGGGAGATAAAGCGCAGCTTTATCGGGGTGAGGTTAAGTTGTACCTCACTCAATCGATAACCGCTATAAGTGTAGACCTCAATATAGTTTGGAATGTAATTGAGAACTATTTGCCAGATTTAGAAAAAACGATTGAAGCAATGGCAGGAGAATTTTGGAATTTTAGGTAATTAGCCTCAAAATCTCTGTATTAAAATTTCTGGAATTTAAAATTTTGAATTGTTATTTAAATGATAAACTAATCAATTAACCATTCCGAAGCGCGTTCACCCAGTTCTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 5 4866668-4866050 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073768.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4866667 37 100.0 36 ..................................... GGCTATTGCCTTATCTAATTGCAGTCGAGTCAATGG 4866594 37 100.0 34 ..................................... GCTTGGGATATAAAACAAGGGATATTCCAAACCC 4866523 37 100.0 37 ..................................... CTATTTCTCGCTTCATCCCAACAGCGGTTTTAAGGAC 4866449 37 100.0 34 ..................................... TGCAAAGGGATCATCTTTATTTCATCCTTTGCAG 4866378 37 100.0 41 ..................................... GTTGATTTTTCGATATCGATGGCTCGTTAATCGACAATCGA 4866300 37 100.0 34 ..................................... ATTCCCGCAACCCGCACTCCCTGCTTTTCGGCAG 4866229 37 100.0 34 ..................................... AAGCTATCTTTGTCTTTTTCGACAAAGCGATCGC 4866158 37 100.0 34 ..................................... AACGACCAGAAGACGATCGCCACAAAGACAAGAA 4866087 37 97.3 0 ....................................A | C [4866053] ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.7 36 GTGGCAACAACCTTCCAGGTACTAGGTGGGTTGAAAG # Left flank : AGCAAAGGAATTAGCACTTTCTGCTTACAATCTCCGCCTAACTAGGCGAAGTTAACAAATATCTGAACCTTGATAATAGAATATTAATAGCGCCGCAATTCATGCTGCTTGCAGCCTCTGAATTTTGTTAAATGAGGGTTAGTTTGACTGTATAAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGTCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTGAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAGAGATCCGCGCAAGTTCCAAATACCTTATCTCGTCTTGATTTCATCTTTTTTTAACCAAGGCATGATTCTTGAGACTGAGGCTCAAATGAGAAATTGGGAAACATCCGCGCTGAAGATATCTGGAAAGGTTGGCTCACAACATTTTGTAACTGGGTAG # Right flank : TCTTTTAAACCGAGATTAGTTTTGGGTTTCAGTAACTATTAAACTTAGGGGTGGGTTGAAAGCAAGTCCTTTTATCCGCTTGTTTTAATTGCTTTGTATAATAATTGCAGAGCATATTATATTGATGACATTTAATTTGTCATCAATTAATTAAGCAACGCTGATGGGTCACGACGACAATTAAATAGTCACAATGACATTAATCTGTCACCGACGACAGATAATTTGTCACTGTACACTACGCCTTTTGTGGAGATGTCTAATAAACTAAAAATTTTTGATAGTGCGGATAAAAGGACTTGAACCTTCACTCCTTTCGGAACTAGAACCTAAATCTAGCGCGTCTGCCAATTTCGCCATATCCGCATCAGTTTCCTATATTACCATAACGAATTATCTGTGGCAATAGGGATTCGGGACTGGGACAAGGAGGAATTCCCAATGCCCCATGCCCCATGCCCAATGCCCCATGCCCAATGCCCCATGCCCCATGCCCAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAACAACCTTCCAGGTACTAGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //