Array 1 109232-107738 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESM01000017.1 Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2 isolate FDA_2010_148_Black Pepper-4 SEEM202_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109231 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 109170 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 109109 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 109048 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 108987 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 108926 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 108865 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 108804 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 108743 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 108682 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 108621 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 108560 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 108499 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 108438 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 108377 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 108316 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 108255 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 108194 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 108133 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 108072 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 108011 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 107950 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 107889 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 107828 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 107767 29 93.1 0 A...........T................ | A [107740] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126433-125367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESM01000017.1 Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2 isolate FDA_2010_148_Black Pepper-4 SEEM202_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126432 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 126371 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 126310 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 126249 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 126188 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 126127 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 126066 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 126005 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 125944 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 125882 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 125821 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 125760 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 125699 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 125638 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 125577 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 125516 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 125455 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 125394 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //