Array 1 55-622 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJU02000012.1 Pectobacterium aquaticum strain A104-S21-F16 Pectobacterium_aquaticum_A104-S21-F16_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55 28 100.0 32 ............................ TTCACGTACACCCGTTAGGGTCTTGGCTCTGA 115 28 100.0 32 ............................ TTGAAATGATGTGTCATCTGAAACCATTGAGC 175 28 100.0 32 ............................ GTAAAACGCTGACCGATTAGTTTTTCCATCCC 235 28 100.0 32 ............................ TGGTCAGGGGTCACGCCGCACTTCCGCATTGC 295 28 100.0 32 ............................ CTGACCGTTCGGCTTTTCAGAAGGGGTATCAG 355 28 100.0 32 ............................ ATCCCATGCTTGACGTGTTGCCGCCGGCCCGC 415 28 100.0 32 ............................ AATGTGAAAGAGGCTTTACAGCCGCCTTGCGT 475 28 96.4 32 ................T........... CAGCCGATTAGAGTTGGGGCAATGTAGTTTGT 535 28 100.0 32 ............................ CTTTTTCGATGATGAATCAGGATGGTTGGCAT 595 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCCGTACAGGCAGCTTAGAAATGGTGATGTTTCGGATTATCCATTGAGGAATTG # Right flank : AGTGGTAATGACTTAAAAGCGTTATTTTCATAAGGTATTCTCTTTTGAGGTCACGCATTTATGCCAGCCACGATCAACGTTGCCTGCCGACATTGCCAGCAAACAGAACCCGTCCGTAAGTATGGTATAGGAAAGGCAGGATTTCCCCGATACTACTGTCAACAATATGGTTTTTCACCACCGATGATTGGGGGCGTTACGCACGAGAAACCGAGTCAGAAAAACACCTGACAGGTAAGCTATTCACGCAGAGAATTGAGCGGCATAACCTTCATTTACGAATTCATATTAAACGTCTGGCGAGGAAAACAACCTGCTTTTCACGCTCATTTGAAATACATGAAAAGTCATCGGTACTTATATTGAAAAACACCATTACAACGCATTTGCGTCATGACTCGTTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGGTCCATATGGCAGCAGAGTTGGTAGAAAGCCTTGTTGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22070-18560 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJU02000030.1 Pectobacterium aquaticum strain A104-S21-F16 Pectobacterium_aquaticum_A104-S21-F16_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22069 29 100.0 32 ............................. GTGAATTCTTTCCGTGTTCTTTCACAGAACGA 22008 29 100.0 32 ............................. CCTGTTGCTAGCGGTGATGTAATTACCAGTAC 21947 29 100.0 32 ............................. AAAGTAGCTCTTTTTGCTTTTTCTGGTATGGA 21886 29 100.0 32 ............................. TATGTTCAAAAATTTGAACTCACTTACACAAG 21825 29 100.0 32 ............................. TGTTAGGCGGATATCATCAGCTAAATGGCAAA 21764 29 100.0 32 ............................. CAGGTTGTCAGGAATTTTACGAGGTTCTTGGA 21703 29 100.0 32 ............................. CACCATTTGGGGGTATTTTCTGATGTTATAGA 21642 29 100.0 32 ............................. TATCACTTACATTCAGAATGGATTCAGAAGGT 21581 29 100.0 32 ............................. GCTTGGCCTCGGTATTCAGATTTTTAGGATTG 21520 29 100.0 32 ............................. CTCAGATTGCCTTTGAGCGGCCGGAACGGCAC 21459 29 100.0 32 ............................. CGGCATTTCGAGCGCCGAACGCAGGCCGGGGA 21398 29 100.0 32 ............................. CTACTACTTGAGCTATTACTCACAAAACCAGA 21337 29 100.0 32 ............................. CCTTTGGTCATTGCACGGTTTACTAGCGGTAA 21276 29 100.0 32 ............................. CATACAGATAGGCTCAACTCGACGAATACCAC 21215 29 100.0 32 ............................. GATATCTACGGGCGTTATTGTGTTCCGAAAAA 21154 29 100.0 32 ............................. GCGTTATATAATCAGATTTGTACGTTGGCATT 21093 29 100.0 32 ............................. ACGAGAACTACCACTGGATCGCCATCGTAGAG 21032 29 100.0 32 ............................. CCCATATCACGAGCCACAGACAGTACCCCTTT 20971 29 100.0 32 ............................. CTTTACGACATTGACGGTGATATTGCTGACGA 20910 29 100.0 32 ............................. GTTTGCATCGCGCGTTACCGTTCCGCTAGCCG 20849 29 100.0 32 ............................. ATTCCTTTTTTGCCGAGTCTCCGCCTTTTTCG 20788 29 100.0 33 ............................. CCGGAACCAAAAGATAACGGCGGCTATGGCTTT 20726 29 100.0 32 ............................. CCGGTCGTAACAACGATTACGACGAGTGGCGC 20665 29 100.0 32 ............................. GGAAAAATTCACTATTACCCCCAGATGGAGAG 20604 29 100.0 32 ............................. AATCTGGTGCGTCAGGTGCCGTTCGTGCTGGA 20543 29 100.0 32 ............................. GCTGCGCTCGGCCAGTATCTGGAGCATGACCC 20482 29 100.0 32 ............................. CATCGCGAATGGCTCGGGTTACCTTTAAATTT 20421 29 100.0 32 ............................. TTATCTTTACCTCACGGCACGATGCAGACCAC 20360 29 100.0 32 ............................. TATTGTCAATGCTACAGGCGCATCGAATATAT 20299 29 100.0 32 ............................. GCTCTGGCAGCTTCTCAGGAATTTTCCAGCGA 20238 29 100.0 32 ............................. AATGGCCTTTCGCTCTGCCTTTCCATTCTCAG 20177 29 100.0 32 ............................. CATCATTCGTTCAGCGTATCGGCGGCAGTTGG 20116 29 100.0 32 ............................. CATTTGCAGTGGAATCGAGGCTGCAAGTATAG 20055 29 100.0 32 ............................. AAATGGCAGAAGAAGCGGTGACGGAGGAAATC 19994 29 100.0 32 ............................. GATTTGATATTCCGTATATCATAACCAGATAT 19933 29 100.0 32 ............................. GCCAATGTAAATCTACCATTAATCTTAACCAG 19872 29 100.0 32 ............................. TTACCGATCAAAAGGCTGTTGTGACTGAATTG 19811 29 100.0 32 ............................. TCAGAGGCGCTAACCTTGATTTCGTAAACAAC 19750 29 100.0 32 ............................. TTTCGGTCGAGCCTTTGGCGAACGGCCACTTC 19689 29 100.0 32 ............................. CCTCGCCCCACCCTTCAATAAACTTGATGAAT 19628 29 100.0 32 ............................. GCGTGGCAGGTTGCGCTCCCTCTGTATCGAAT 19567 29 100.0 32 ............................. CCACCAACTCACGCCCGCTTATGGGTGCAACC 19506 29 100.0 32 ............................. GCTTCAGGGCGTTTAACCGCCAGCGCCAGGCG 19445 29 100.0 32 ............................. ATGCGCTTAACACTGTTGCTGATTCTTACTTT 19384 29 100.0 32 ............................. TACAGCGGTTGCTTAGTCCAGTTGCAGCACGC 19323 29 100.0 32 ............................. GTTGCGCGACGCGCCCGTACCCGAAACTCGCC 19262 29 96.6 32 ............................A TGTTTTCACCGATAAACGCAGCGTTTCTGTAA 19201 29 100.0 32 ............................. GCAATAAAAATACCAGCAGTGCTTTCTACTGG 19140 29 100.0 32 ............................. AAACCGTGTCATCAGCCATGCTCGTGCTGGCA 19079 29 100.0 33 ............................. CAATGCGTTAACTGGTGGAACGGCAAAAACCAG 19017 29 100.0 32 ............................. TTCCTGGTGCCGCGTCAGGATGCGACCTATGA 18956 29 100.0 32 ............................. GATGTAACGATTCCGGCCTGTTGGTCGGTAAA 18895 29 100.0 32 ............................. CAACGTCAGATGTAATTCCACTGGCAGCTACC 18834 29 100.0 32 ............................. ACATATTCTCTGCCGTTATGGATTTACATGCA 18773 29 100.0 33 ............................. GATACATGGGCGTATCTCAAATGAGATTTTGCA 18711 29 100.0 33 ............................. TAGATATTAGAACTCTAAAAAAGAGAGAGCAGC 18649 29 100.0 32 ............................. ATAACGCTTTCGGAGCCTTCCTTGGACTGCTT 18588 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCTCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGTACGCCATTTTTTTGCCCACCGTCACGGTGATGTGCTATGCCCATAATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAACTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGATTTGTATGAAACAGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGGTCCGCGCTGTTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAACGTGTTCCAGCCGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 383-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJU02000061.1 Pectobacterium aquaticum strain A104-S21-F16 Pectobacterium_aquaticum_A104-S21-F16_contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 382 28 100.0 33 ............................ AGCATAGCAATGAACGGGCGATCTTCGGGCGGA 321 28 100.0 32 ............................ ACGCGAAAACATCCATCTTGTTCGCGTTGTTC 261 28 100.0 32 ............................ AACACGATAAATCGACCGCATAAAAAAATAAA 201 28 100.0 32 ............................ AGCCTGACCAGCAAATGCATCGAATGCATCTG 141 28 100.0 32 ............................ GTATAACGAGAAGAGGGATTCTGAAGAGTGGC 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCCGTACAGGCAGCTTAGAAATGATGCACATTGGCA # Right flank : AGCGAACGTCACGGGCTAGTCGTAACCGGATTTGTTCACTGCCGTACAGGCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7385-6637 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJU02000060.1 Pectobacterium aquaticum strain A104-S21-F16 Pectobacterium_aquaticum_A104-S21-F16_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7384 28 100.0 32 ............................ ACCGTCTGTGGCCACGTCAATAGCATACTCAA 7324 28 100.0 32 ............................ GCATCAGATGACGTACGGCGATAGCGTTGAAC 7264 28 100.0 32 ............................ CTGACTAGTGAATATCGGCGTTGGCACCCCTC 7204 28 100.0 32 ............................ TACCGACTGACGCTATCCGTTATTGCGATAGC 7144 28 100.0 32 ............................ GTTATCGTTAAATTTCAGTGTAGATAAATCAA 7084 28 100.0 32 ............................ GGTCATCGGCTCCGATAACATCAGAGGAAAGC 7024 28 100.0 32 ............................ AATCGCTACAATTGGAGCCTGCGGGTTACTTC 6964 28 100.0 32 ............................ ACGCTCTTGCTGATGCAATACATCAGGCAAAG 6904 28 100.0 32 ............................ GACGCAAGATATTTCGCCGTGAGCAGACGCAA 6844 28 100.0 32 ............................ ACGCAGTATTAATACACGATGTTGAAAGCGCG 6784 28 100.0 32 ............................ CAGCCACGGGCGAGCGGGGATCGTGATGCTGT 6724 28 100.0 32 ............................ AAAAATATTAAGCTGAACAAACACGGCAACCT 6664 28 78.6 0 ......................CGCTTT | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGACTGCCAATTGGGTTTGACCGGACGCAACATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTAACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCCACTTATCGTTTATTATTGCTGGCTACACCATAGGCTAAGTATAGATATTAATCACTCCACTGCATATTCATAGCATATGCAGATACCTAATATAGGCCTATCGACGATAAATAAAATCTTTGTCATACGTTCATGACCCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTTGATTACCTGTCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATGAGTCCACTACCGTAAAATACGAACA # Right flank : TTATCGGGATACGTCACTGGCGCGACGCATTTCGTGGCGTTATTCCCCATTGAGCGTGACAACCAGTGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACCTTTATCTGGCGCAATGCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16845-18374 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJU02000060.1 Pectobacterium aquaticum strain A104-S21-F16 Pectobacterium_aquaticum_A104-S21-F16_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16845 28 100.0 32 ............................ GGATCGAAATAGGTTACCGGAACCGGGATGCC 16905 28 100.0 32 ............................ TTAGTGTACGCTGGCAGGCCGATCGTCTGCCG 16965 28 100.0 32 ............................ AAAGGGAATAAAATACGATATTTTCCATTACG 17025 28 100.0 32 ............................ GATGGAGTTGATGCGCGCATTGGAACAACATA 17085 28 100.0 32 ............................ GCGCAAGTCGGCACCGCGCAAGTTGGCACCGC 17145 28 100.0 33 ............................ AGGCTTGGCCCAGCGCATGGTACTCTTGGACAA 17206 28 100.0 32 ............................ AATGTACCAAAGACTCGATGTGTATGACTACA 17266 28 100.0 32 ............................ TGCCGATCTGTTCTGGCCGAAAGGCTTCAATC 17326 28 100.0 32 ............................ TACCCCAGCACCGGCGACGAAAACTAACCTTG 17386 28 100.0 32 ............................ AATCAACAGGGTGGTATTTATAGTGGGTGTGT 17446 28 100.0 32 ............................ TGATTTCAACATCGCCAACACAGCGGCTTTCT 17506 28 100.0 32 ............................ GTACAAGTTGGCACTGCGCAAGTCGGCACTGC 17566 28 100.0 32 ............................ GCTACGGCCAAGTCTGAGGCGATCAGTTCAGC 17626 28 100.0 32 ............................ TTGCTCATTTGCCACCTGAAACAGATCTAACC 17686 28 100.0 32 ............................ GTGCATGTCACACAATGCGTTCAAGTCGCTGC 17746 28 100.0 32 ............................ GCTGGGAGGGACAATATAAACACTGGCTTGAT 17806 28 100.0 32 ............................ ATGATTATTCCCCTTGTTCCATGCGTGCGTAC 17866 28 100.0 32 ............................ GTAATAAGTTCCAGTAACGAAACGATAACTTT 17926 28 100.0 32 ............................ AACCCTCGTTATCATTGAGTCGCCGTATGCGG 17986 28 100.0 32 ............................ TTACGTTGTCAACAATTATTTTATAAGGTGGA 18046 28 100.0 32 ............................ GTCACCGAGTAAAACACCCACAATGTACGGGT 18106 28 100.0 32 ............................ GCGATACCGATCTGAAATACAGTGTAGGCTTC 18166 28 100.0 32 ............................ ATCAGCCTGCTTTGATTTCTGCGTGCGGTACC 18226 28 100.0 32 ............................ GGAACACCGCACGATCCGCGCATCCACACAAA 18286 28 100.0 33 ............................ GTGACATTCGTTGACGACTTGCTACCGAAGGAT 18347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGATTTCCCTCTTCCGTAACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAACGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGACTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTTCT # Right flank : CACCGCACGTACACGTTCACCACAGTGCGGACGTTCACTGCCGTACAGGCAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTACAGGCAGCTTAGAAATCGGCAGTTGCACAACGCATCAATAAACAGCGGTTCACTGCCGTACAGGCAGCTTAGAAAGATTCATGAAATCGGCAGGGAGTTAGTAGCTAGTTCACTGCCGTACAGGCAGCTTAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 18658-18805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJU02000060.1 Pectobacterium aquaticum strain A104-S21-F16 Pectobacterium_aquaticum_A104-S21-F16_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18658 28 78.6 32 NNNNNN...................... TCGGCAGTTGCACAACGCATCAATAAACAGCG 18718 28 100.0 32 ............................ GATTCATGAAATCGGCAGGGAGTTAGTAGCTA 18778 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGGCTTCGTTCACTGCCGTACAGGCAGCTTAGAAAATCAGCCTGCTTTGATTTCTGCGTGCGGTACCGTTCACTGCCGTACAGGCAGCTTAGAAAGGAACACCGCACGATCCGCGCATCCACACAAAGTTCACTGCCGTACAGGCAGCTTAGAAAGTGACATTCGTTGACGACTTGCTACCGAAGGATGTTCACTGCCGTACAGGCAGCTTAGAAACACCGCACGTACACGTTCACCACAGTGCGGACGTTCACTGCCGTACAGGCAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //