Array 1 19743-21152 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000001.1 Megamonas funiformis strain SW1228 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 19743 30 100.0 34 .............................. GCGATAAAATTCTAAATATATCCGCTGAATATGA 19807 30 100.0 35 .............................. GCTGACAGCACCTATTGGCTTATTACTAGCGTTAT 19872 30 100.0 36 .............................. ATAATTCCTGTGCATTCGCTAAGGATTGCGTCAAAC 19938 30 100.0 36 .............................. TTACTTGTGCCCATGTATCACTTACTGCGTCTTGAG 20004 30 100.0 36 .............................. TTCATGTTTTTCAACCTCCTTCTTAGGCACCTGCAC 20070 30 100.0 37 .............................. ACTTTTAAAGCAATTTTAGAACAGTACAAAATACCTA 20137 30 100.0 36 .............................. AGTAATGATGTATTTTGGGATATGGTATTAGATATA 20203 30 100.0 36 .............................. ACAGCGACCAACAATAGATGGCGGTGCAGTATTTAA 20269 30 100.0 38 .............................. AAGAAGCGTTTGAAATGGGTATTCGTTATGGTGAAAAA 20337 30 100.0 36 .............................. TTATTTGCTTGTAATGCTGTGTCGCTCATTTTATCA 20403 30 100.0 36 .............................. GCCAGGACATTTTGTTTTCACTGTAAAAGATACTCC 20469 30 100.0 36 .............................. ATTCCTAAAACGCAGTAACCGTCTTTAAGTCCATCG 20535 30 100.0 36 .............................. TGGCATCAAGACTAAAAGATTATACAGGCAATAAAT 20601 30 100.0 34 .............................. AGACTAGGCAAAGTAAGTTTAGCAAGTCCCATAA 20665 30 100.0 36 .............................. TAAATCTAGTTGTAGCTATGTAAATAAAATAAAATC 20731 30 100.0 34 .............................. ATTACATTTACGCCATAATCCATATAAATTCTAA 20795 30 100.0 36 .............................. TAAAAATTAAATACAACTTTCATTTTACAAACTCCT 20861 30 100.0 34 .............................. TGGTTTATTTCTCCTTTTATAAAAATGGCATTTT 20925 30 100.0 35 .............................. GGAGCATTAGCGAAAACACTAGGATTTTACACCGC 20990 30 100.0 36 .............................. TGCATCCACATTTATCAGATAATCCTGTATATTGAC 21056 30 100.0 37 .............................. GCCACCTGTTGCCATTGGTAGCCATTTATATACTTTT 21123 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.2 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAACGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTATTTTCCCAGCCATTTTTTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATTAAAAATCATCCAAAATCCTAAATCGCTGGTAAAAACTCATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTGTTAATTTTACTGGC # Right flank : AAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAGTCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGATTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 76984-78782 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000002.1 Megamonas funiformis strain SW1228 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 76984 30 100.0 37 .............................. TCCACAAAAAACGGAACAAGGTAACCACTATCTAAGG 77051 30 100.0 36 .............................. GATAAATCTACAGTAACTCCACTTTCTGCCATATTA 77117 30 100.0 36 .............................. TCACGCTAACCCAAAAAAATTGTAGCGGTTCCGAAT 77183 30 100.0 35 .............................. AATCGGGGGGTTCGAAACCAAAAAAAATAATGTGG 77248 30 100.0 35 .............................. TGATGAAAACTTACAAGACAGCCTAACTGTACCAA 77313 30 100.0 35 .............................. AGTGGGCACTGTCCCGACCACACATTTACTTATTG 77378 30 100.0 36 .............................. AATAATAATCGGCTTTCTTATCATAAATAGCATATA 77444 30 100.0 36 .............................. ATTGCGTACTAATTCCGCCATAGAATTAAATACTGC 77510 30 100.0 34 .............................. ATTCGTTCATGCTTATGCTCCTTTTTGTTTTTAC 77574 30 100.0 36 .............................. TGCTATTAATTGTTGCGATAACAACAATCTAAACGC 77640 30 100.0 36 .............................. TGTTTTATATATATTCTTCCTTCATTATTAAATCCG 77706 30 100.0 35 .............................. AGGTATATTAAGTATTGATGATAATACGCAAACGG 77771 30 100.0 35 .............................. ATAATGTTCCTGCTATTATTTGCCATAATAGCCTT 77836 30 100.0 34 .............................. CCCTATAACGGGTTATAGAAGTAAAGAAGGTAGA 77900 30 100.0 36 .............................. ATCGAGTTCTGGAGATGACATTTATGAAGAAGTTTA 77966 30 100.0 34 .............................. GACAGTGAAATACAGGCTAAAAGAATTGTTATTA 78030 30 100.0 36 .............................. TCAATGATAAACATTTTATTCCCACCAAATGGGACT 78096 30 100.0 34 .............................. ATTTTAGCCAATATTATATCCTTATATTCTGGAT 78160 30 100.0 37 .............................. GAAGTTGTTGAATTTGATAATTATACTTGGGAATGTA 78227 30 100.0 36 .............................. TCTAATTTTTGATTTTGCTTATCTATAGGCATATGA 78293 30 100.0 36 .............................. TAAAATAACTAAAAGCATGATAAGCTATTACACTAG 78359 30 100.0 36 .............................. GCAGCCAAACCGAGAGAATTCTGGTAAAAGTATCTC 78425 30 100.0 36 .............................. GCCCAATTCTTACCTATTTTTCCTTCAGTATCCAAT 78491 30 100.0 36 .............................. TAAAAAAGGTGAGAGCATTATTTATACAGGAAAATC 78557 30 100.0 36 .............................. AGATTGTCTATTTGACAACTTTCGTAGTTGTCTTTA 78623 30 100.0 36 .............................. GTTATTATGATTTAGTTAACGTTAACGAATCTAATA 78689 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 78754 29 76.7 0 ...............TT.-.A.....CT.A | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.2 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AAATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGACCCATACCTTTTAATTGTACAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCGACTTTCTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAATAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATAGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCAATTACCCATACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 167805-168163 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000002.1 Megamonas funiformis strain SW1228 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 167805 30 100.0 35 .............................. TTTCTACACCTGCACGGATTAGCCCGTTTTGTGTA 167870 30 100.0 35 .............................. GAAAATGGCTTGCTTACTACAGGAGTAGGGCAAAA 167935 30 100.0 36 .............................. AATGGAATGCCTGGAAAAGCACTATAAATTAGGTGC 168001 30 100.0 35 .............................. AATGTTAATTTACTCTATATCTGTTATAAATTTAA 168066 30 100.0 38 .............................. ATGTTTCGGTTGATTTCACAGCAACAGTTTTGCATATT 168134 30 93.3 0 ................T.........T... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : CAAGGTTCAGGTTGTGCTATTTCTCAAGCTTCCACAGATATCATGATTGATTTAATGCTCGATCAACCAATCGACAAAGCCAAAGAATTATGTCGTTTATTCATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCTCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTCAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAACTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTTATCTAAAATTTACCAAACAAAATCAAGAAAAATCTCGCTAATCTTTGATAAATAAACATTTTCACTAAATCCCTTCAAATCTCATTATCGCTGGTGAAAAATAACTAAAACCCTTGTCCACTAATACTTTTAATAGTATAATAAAAACCATAAGGATTAATTTTTCTAGC # Right flank : TTAACTCTCTAGCATTAACGTAACAATGAAAAAAGCCTTAGGAACTGACCATTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATAGATTACATAGATTTTGCAACACAAAACTTATTATTATCGTACAAATTAGAAAAACAGACTTATATCTTTAATTCTTCTATATCAGCTAAAAGCTTATCTAATTTTTCTACTATACGCTTTTGTTCTGCTAATGGTGGTAATGGTATTAAAAAATTTACAATATCTTTCAAATTCAATTTAAAAGTATGTGTTCCACCACCTACTTTTACTTTATTTATTTGCCATTCAAAACTAGGACTATCCATATATGCTTTTAAATATACATTTATATCTTTATTAATTAATTTAATTAATCCTAAACTAACAAAAATACTAAATTCAAAATCCAAATCAACAATATACGGATGTCCTAATGTGCCTATTCGACAGAACAAAATATCGCCTTTTTCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 71-297 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000030.1 Megamonas funiformis strain SW1228 30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 71 30 100.0 35 .............................. ATTTTTCCCTTGTTCATCTTATTTTGAATAATTTC 136 30 100.0 36 .............................. TTACTAAATCCATGTATTCGTCTACATCTTCACCAT 202 30 93.3 36 ......T..........G............ CCTAGATGCTTATTGGCTAATTTTAATATTCTTCTA 268 30 80.0 0 ......T..T.......G.....TT....A | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 93.3 36 GATAAACATCAACAGATACTGTACGAAAAC # Left flank : AATTATAAAAATCTTGCAATATCAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGGG # Right flank : AAAGTCCTCTTATCTAATAAAGAGGACTTTTATTTTTATTCAAATTTAATTAATTTTTCTTTTCAATACTCACCTTTATAGGTTATAATTATATACATTATGCTTAGAAAGGTTTTTATTATTATGAAAAATTTCTTTATTGAGTTTAAAAAATTTGCTTTTAAAGGTAATATGCTTGATTTAGCAGTTGGTATGATTATTGGTACTGCTTTTACAGGGCTTGTAAATTCCATTGTAAAAAATTTAATCATGCCTATAATCAGTATTTTTACTGGTGGTATTGATTTTAATAATATGTATCTGCCACTTAGTAAGGCAACTTTTATACTCGCTGAAAAAGGTGCTGACCTTGAAACAGCTAAAAAAGCTGGTGCAGTTTTTGCTTACGGTGCCTTTTTAACAGATTTTCTCCAATTCTTAATTTTGGCTTTCGTAGTCTTTTGTTTAATTAGACAGCTAAATAAATTAATTCCTATTCCTAAAGAACCGCCAAAAACAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 111390-110374 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000004.1 Megamonas funiformis strain SW1228 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 111389 30 100.0 37 .............................. GCTCCATCTGTTGAAACTTGAACCATAACCAAATCGT 111322 30 100.0 35 .............................. TGCAAAAAATTTTTCTTGCCTTTTTGGAGCTGGTG 111257 30 100.0 36 .............................. TGCGGTAAATTTTGCCCACAAGTAGGACAAATATTA 111191 30 100.0 36 .............................. CTCTAAAAATAGTAATATAGAAAACAAAGTAATTCG 111125 30 100.0 34 .............................. CTCGCTCCGTCTCTAATTCCAGGATTACAGTATA 111061 30 100.0 35 .............................. AGAAAGTAAAATAATGCAAAGTATTTTAGATACGC 110996 30 100.0 35 .............................. ACGTCCTGTAATTTAAGCAGGGCTTTTGTTTTTTT 110931 30 100.0 36 .............................. TCTGCCGATATAATTTCATGAGATGTTGCAATCTTA 110865 30 100.0 36 .............................. ACATAAAAGGCAGTAATATATATGCTTTTAGCAACT 110799 30 100.0 36 .............................. AACTTTAACTTTATTATTTTTTGCTTTAGATTTTTT 110733 30 100.0 36 .............................. TGGTAATAGCATAAAATGGAAAGGATTTCTTATTAT 110667 30 100.0 36 .............................. TACTTTTCCAAGACTCCCTCGAAATAATCGAGATTT 110601 30 100.0 34 .............................. TATGGTTTTGGGAGCAATATGGGGGCAACCCAAA 110537 30 96.7 38 ....................A......... ATAAGTCTAAGAAATTAGAGAAAAAACAAGCCAAGGAA 110469 30 100.0 36 .............................. GGAATGAGTGAAGCTGAATTTAAAAATAATGTAAAA 110403 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.4 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTAAATAGTAATAGGTTATTATCTGAAAAACAAATCATTTATATGTTAAATGTATTCTATAATAAAAGAGTTGATGTTTCTTTCTATAATCAAATTATTGATTGCTTTATCTATAAAATTTATATTTACTCCGACAAAATATGTATTGTCTATAACCTGAATAATAGTGATAAAGACGTGACTTACTCTGATATTAACGAACTATATAAAAGTTCGCACCTTAACTCATGCGGTTCACCATTAACAATAATTAATTATGTAATCAAAGCAACTATCAATGATAGTTGCTTTTTTATTTTATTAAAAACTCTATAAAAAATTCTTATTCATCATTAAATTTTACCAGCTAAAATTATGAAAAAATCCTCTAAAGCTTGAAAATTAAGTATTTTTACAAAATCTATTAAAATAAAGTTATAGCTGGTAAAAAGCAACTAAAATCCTTGTATATCAATACTCTTAATAGTATAATAAAAATCATAAAGATTGATTTTTCTAGT # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTATTTAGAATTATTTTTCAATTTCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAAAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 92146-89804 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000006.1 Megamonas funiformis strain SW1228 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 92145 30 100.0 37 .............................. TTTCAGCCTCCGTAGCATAAAATAATACATATCTAGT 92078 30 100.0 34 .............................. ACTAGTTTCTTTAAAGCCCTTGGGTATTTATTAC 92014 30 100.0 38 .............................. TATATTCAGTTCCGTTTAAGATTACACTTTTTACTGTT 91946 30 100.0 36 .............................. TTTATATTTTCTTGCTGCTGTTTAATCTGCATTTGT 91880 30 100.0 35 .............................. TTAAAATCAATATCAGGATATTTCTCAAGCAGCAT 91815 30 100.0 36 .............................. AAAGTATTGCCATTTTTATTAGTGATAGCAAGATAC 91749 30 100.0 36 .............................. TCAGAAGTCTTTATACAAAATCCTGCTCTAAGTGCC 91683 30 100.0 36 .............................. TCTTCTTGTTCATCAAAGGCAGGTTGTTCGATTTTA 91617 30 100.0 36 .............................. TCTATATGTATGATATTGGTTTGGTCTTGCTTATTA 91551 30 100.0 36 .............................. TGCTCACTAAAAAAATCGCAGCCACAAAAAACTAAG 91485 30 100.0 36 .............................. GAATTTAAAAGCCCTGTTTATAATATAATAGCTGTA 91419 30 100.0 35 .............................. ATAATATCCATTAAATCATTATTCCATGTTATAGA 91354 30 100.0 36 .............................. TTTCTAAACTAAATATTGCTACAGGCTTATTAAACT 91288 30 100.0 36 .............................. AGACTACGTTAACTGGTGTACAGAATATGACGGTAT 91222 30 100.0 39 .............................. GCTGTAGATTTTAATAATTGCTGTGCTAATGTTTCTATT 91153 30 100.0 36 .............................. TTTGTATCTGGTACATAAAATACAGCATAATCAACT 91087 30 100.0 36 .............................. TCTAAGTTTAATTCTTCTATGACGTATATTAAATTA 91021 30 100.0 38 .............................. GGGCAGTACTTAGCGTTTGCATGTAGCCCTGTTATTTC 90953 30 100.0 36 .............................. AACGATTGCTTTATTATTTAGACTTATTGAAAAATT 90887 30 100.0 35 .............................. TTAATTCAGCTAAAAAGTATTGACCAAAAGCACCA 90822 30 100.0 37 .............................. ATAAGTATTTCCAGAACTTAACTGTAGTTGTTTTACC 90755 30 100.0 37 .............................. TGTTTTCTTACCTCCTTCTTAGGCACCTGCACCGGCA 90688 30 100.0 37 .............................. TTACGTGTTGCGTAATTACCATAGAAGTTTACGTTTA 90621 30 100.0 35 .............................. ATAATACCAAGGGGGTGCAACCACCCCCACCTAAA 90556 30 100.0 34 .............................. TTAAGTAGAGAAAAACAAATGATAAAAATTGAAG 90492 30 100.0 34 .............................. TTCTGCTGTTAGATGGCGTTCTTTGATTGTTATT 90428 30 100.0 36 .............................. AGCCACCGTAACCGCCCATTGTAAGAAGTTGATATA 90362 30 100.0 36 .............................. CAGGAGCAGCTGCAAAAGCTGGAGCAACCGCAGATG 90296 30 100.0 37 .............................. GACTTGCTGATTATTTTGATTGATATAGTCCGTGATT 90229 30 100.0 36 .............................. TAAGATACTACGTATTTTGCTATTTTTTGGCTATAA 90163 30 100.0 35 .............................. CCCCTTCCTTTTTTTGAGCAAGTGGAAAATTTTTT 90098 30 100.0 35 .............................. TCTACTTTTACAAACCTTACGGCATCACGTTTTCT 90033 30 100.0 39 .............................. AACCTTCTGCAGTCTTATAATTTTCTGTATCCAGTTTAT 89964 30 100.0 36 .............................. TAAAAAAAAGGGGGATTAAAAAATGTTATGTGAGTA 89898 30 100.0 35 .............................. ATAGCTTTTTTTCTAGTATCTTTATCTTTAATACT 89833 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 100.0 36 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : ATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTATGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCGCATTTTCAAAACTCAGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAGTTAGAGTTACAAAAAATTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATAAGTATATGTATATAAACCCTTATAAATACAAGAGTTATAGCAAATTTCTTTCATTAAAGAAATAAATGCATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGTTTTTGAGCTATATTATAAAATATAAAGCCTTTAAAAACGAGG # Right flank : CCAAGAATCCTCGGTCTTTAGATATGGGGAGTATGTCAATATTTGTATTATGGTGATGTCTATGATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAACGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGCATTAGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACAATAAAGATCTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATGGCATAAACATAAGGATGTTGTTTTGTATAGAATGATATTCTTATGTTTTTTTATTAGATGAAACCTTAGTAATATGTCTTTATAGTATAATTGAAAAAAACTATAGGATATGATGATATGAAGGATAATTTTAAATTGGAGATGACAACAGTATGGTCTTTTCCTAAAAGAGGCAATTGGGCTACACATTCAGGAATGTATCGTGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 126853-127409 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOQ01000007.1 Megamonas funiformis strain SW1228 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 126853 30 100.0 36 .............................. GCTTGCTAAGTCCGAAGAATAAGATGTGGCAATAAT 126919 30 100.0 36 .............................. CGACAAAATTTAGCTCTACTCCAGCCTAATTTCTCT 126985 30 100.0 37 .............................. GTAAAGATATGCCAAACATATAAACACCATCAAATAG 127052 30 100.0 36 .............................. CGATTGATTTAGCTTTTGCTTCATCTTCTTTATTTA 127118 30 100.0 36 .............................. GTTTTAAAAATATCACCTCGCTATATGTTTTATCTT 127184 30 100.0 36 .............................. TATATATTCTTCAAAAATTTTTGCTGTATCTCTTTT 127250 30 96.7 36 ...............A.............. CTATTTAACTTTAGTTGTTTTAATAATTTTCCATTC 127316 30 96.7 34 ...............A.............. TTTGTTACTTTTCTGTCTAAGACATTTATTTCAA 127380 30 90.0 0 .......................TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.2 36 GATAAATATCAACAGTTACTGTACGAAAAC # Left flank : GCTGTCAGACCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAGATTTTCTTTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATGATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACCTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTAATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTTATAAACCTTAATCTTTAAGGG # Right flank : AAGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATACCTAGATGCGTATTTGCTCCTATTGATGTATACTGGGAAAACTCTGCCAACATTAAGATTATTTTATTTGCCATTATATTGTTTTTTAAACTAAACCTACATTTTCCTTGAAATGTGGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAATGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGCGACTAAATTCATTATTATATCATGCGGTTGACAAATCATATTGTCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGTTACTGTACGAAAAC # Alternate repeat : GATAAATATCAACAGATACTGTACGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //